Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18130

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18120 and ABZR87_RS18125 are separated by 38 nucleotidesABZR87_RS18125 and ABZR87_RS18130 overlap by 1 nucleotidesABZR87_RS18130 and ABZR87_RS18135 are separated by 296 nucleotides ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708 _RS18120 ABZR87_RS18125: ABZR87_RS18125 - flagellar biosynthetic protein FliQ, at 429,747 to 430,025 _RS18125 ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220 _RS18130 ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680 _RS18135 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 429.068 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.153 kb on - strand, within ABZR87_RS18120at 429.153 kb on - strand, within ABZR87_RS18120at 429.263 kb on + strand, within ABZR87_RS18120at 429.263 kb on + strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.408 kb on - strand, within ABZR87_RS18120at 429.408 kb on - strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.426 kb on - strand, within ABZR87_RS18120at 429.428 kb on + strand, within ABZR87_RS18120at 429.443 kb on + strand, within ABZR87_RS18120at 429.661 kb on - strandat 430.185 kb on + strandat 430.185 kb on + strandat 430.185 kb on + strandat 430.186 kb on - strandat 430.929 kb on + strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.930 kb on - strand, within ABZR87_RS18130at 430.938 kb on + strand, within ABZR87_RS18130at 430.939 kb on - strand, within ABZR87_RS18130at 430.965 kb on + strand, within ABZR87_RS18130at 430.965 kb on + strand, within ABZR87_RS18130at 430.966 kb on - strand, within ABZR87_RS18130at 431.869 kb on + strand, within ABZR87_RS18130at 431.950 kb on + strand, within ABZR87_RS18130at 432.000 kb on + strand, within ABZR87_RS18130at 432.001 kb on - strandat 432.229 kb on + strandat 432.230 kb on - strandat 432.239 kb on + strandat 432.239 kb on + strandat 432.240 kb on - strandat 432.240 kb on - strandat 432.240 kb on - strandat 432.338 kb on + strandat 432.338 kb on + strandat 432.339 kb on - strandat 432.339 kb on - strandat 432.443 kb on + strandat 432.444 kb on - strandat 432.595 kb on + strandat 432.595 kb on + strandat 432.596 kb on - strandat 432.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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429,068 + ABZR87_RS18120 0.66 -2.7
429,152 + ABZR87_RS18120 0.70 +0.3
429,152 + ABZR87_RS18120 0.70 -2.9
429,152 + ABZR87_RS18120 0.70 +0.4
429,153 - ABZR87_RS18120 0.70 +0.1
429,153 - ABZR87_RS18120 0.70 +3.1
429,263 + ABZR87_RS18120 0.76 +1.0
429,263 + ABZR87_RS18120 0.76 +1.2
429,264 - ABZR87_RS18120 0.76 -2.3
429,264 - ABZR87_RS18120 0.76 -3.5
429,264 - ABZR87_RS18120 0.76 -2.3
429,408 - ABZR87_RS18120 0.84 +0.2
429,408 - ABZR87_RS18120 0.84 +2.4
429,425 + ABZR87_RS18120 0.85 +0.8
429,425 + ABZR87_RS18120 0.85 -0.4
429,425 + ABZR87_RS18120 0.85 -4.8
429,426 - ABZR87_RS18120 0.85 +0.7
429,428 + ABZR87_RS18120 0.85 -3.0
429,443 + ABZR87_RS18120 0.86 +0.9
429,661 - -0.7
430,185 + +0.7
430,185 + -0.5
430,185 + +0.3
430,186 - -2.8
430,929 + ABZR87_RS18130 0.41 -1.3
430,930 - ABZR87_RS18130 0.41 -1.7
430,930 - ABZR87_RS18130 0.41 +0.5
430,930 - ABZR87_RS18130 0.41 -0.2
430,930 - ABZR87_RS18130 0.41 +1.8
430,930 - ABZR87_RS18130 0.41 -2.3
430,930 - ABZR87_RS18130 0.41 -0.9
430,938 + ABZR87_RS18130 0.42 -2.4
430,939 - ABZR87_RS18130 0.42 +2.8
430,965 + ABZR87_RS18130 0.43 -2.6
430,965 + ABZR87_RS18130 0.43 +0.1
430,966 - ABZR87_RS18130 0.43 +0.2
431,869 + ABZR87_RS18130 0.84 -0.7
431,950 + ABZR87_RS18130 0.88 +2.8
432,000 + ABZR87_RS18130 0.90 -1.0
432,001 - -0.9
432,229 + -2.6
432,230 - -0.3
432,239 + +1.0
432,239 + -0.0
432,240 - +2.6
432,240 - +0.8
432,240 - -1.4
432,338 + -2.0
432,338 + +1.1
432,339 - -1.7
432,339 - -3.5
432,443 + -1.3
432,444 - -1.1
432,595 + -0.6
432,595 + -0.7
432,596 - +0.2
432,596 - +0.7

Or see this region's nucleotide sequence