Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17575

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17565 and ABZR87_RS17570 are separated by 95 nucleotidesABZR87_RS17570 and ABZR87_RS17575 are separated by 79 nucleotidesABZR87_RS17575 and ABZR87_RS17580 are separated by 21 nucleotides ABZR87_RS17565: ABZR87_RS17565 - helix-turn-helix transcriptional regulator, at 302,843 to 303,646 _RS17565 ABZR87_RS17570: ABZR87_RS17570 - hypothetical protein, at 303,742 to 304,038 _RS17570 ABZR87_RS17575: ABZR87_RS17575 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 304,118 to 305,422 _RS17575 ABZR87_RS17580: ABZR87_RS17580 - amino acid permease, at 305,444 to 306,820 _RS17580 Position (kb) 304 305 306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 303.128 kb on - strand, within ABZR87_RS17565at 303.145 kb on + strand, within ABZR87_RS17565at 303.146 kb on - strand, within ABZR87_RS17565at 303.378 kb on + strand, within ABZR87_RS17565at 303.379 kb on - strand, within ABZR87_RS17565at 303.426 kb on - strand, within ABZR87_RS17565at 303.585 kb on + strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.935 kb on + strand, within ABZR87_RS17570at 303.936 kb on - strand, within ABZR87_RS17570at 304.081 kb on + strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.082 kb on - strandat 304.226 kb on + strandat 304.226 kb on + strandat 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.304 kb on + strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.305 kb on - strand, within ABZR87_RS17575at 304.412 kb on + strand, within ABZR87_RS17575at 304.412 kb on + strand, within ABZR87_RS17575at 304.469 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.482 kb on - strand, within ABZR87_RS17575at 304.706 kb on + strand, within ABZR87_RS17575at 304.706 kb on + strand, within ABZR87_RS17575at 304.707 kb on - strand, within ABZR87_RS17575at 304.763 kb on + strand, within ABZR87_RS17575at 304.763 kb on + strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.874 kb on + strand, within ABZR87_RS17575at 304.874 kb on + strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.889 kb on + strand, within ABZR87_RS17575at 304.890 kb on - strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.374 kb on + strandat 305.487 kb on - strandat 305.487 kb on - strandat 305.882 kb on + strand, within ABZR87_RS17580at 305.882 kb on + strand, within ABZR87_RS17580at 305.882 kb on + strand, within ABZR87_RS17580at 305.883 kb on - strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.234 kb on + strand, within ABZR87_RS17580at 306.234 kb on + strand, within ABZR87_RS17580at 306.273 kb on + strand, within ABZR87_RS17580at 306.274 kb on - strand, within ABZR87_RS17580at 306.282 kb on + strand, within ABZR87_RS17580at 306.339 kb on + strand, within ABZR87_RS17580at 306.340 kb on - strand, within ABZR87_RS17580

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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303,128 - ABZR87_RS17565 0.35 -4.1
303,145 + ABZR87_RS17565 0.38 +2.0
303,146 - ABZR87_RS17565 0.38 +2.6
303,378 + ABZR87_RS17565 0.67 -0.6
303,379 - ABZR87_RS17565 0.67 -0.9
303,426 - ABZR87_RS17565 0.73 -0.5
303,585 + +1.6
303,586 - +2.2
303,586 - +1.0
303,586 - +2.1
303,586 - -0.4
303,586 - +0.3
303,704 + +0.9
303,704 + -2.7
303,704 + -0.4
303,704 + +0.6
303,704 + -1.4
303,704 + -0.4
303,704 + -0.2
303,705 - -2.3
303,705 - -1.4
303,705 - -1.5
303,705 - -1.5
303,705 - +0.2
303,705 - -1.9
303,705 - +0.9
303,705 - +0.3
303,935 + ABZR87_RS17570 0.65 +1.0
303,936 - ABZR87_RS17570 0.65 +1.3
304,081 + -1.7
304,082 - -1.7
304,082 - -0.5
304,082 - -1.5
304,082 - +0.5
304,082 - -1.4
304,082 - -1.4
304,082 - +0.1
304,226 + +0.2
304,226 + -0.2
304,304 + ABZR87_RS17575 0.14 -0.0
304,304 + ABZR87_RS17575 0.14 -2.5
304,304 + ABZR87_RS17575 0.14 +2.2
304,304 + ABZR87_RS17575 0.14 -1.2
304,305 - ABZR87_RS17575 0.14 +1.2
304,305 - ABZR87_RS17575 0.14 +1.9
304,305 - ABZR87_RS17575 0.14 +0.5
304,412 + ABZR87_RS17575 0.23 +1.6
304,412 + ABZR87_RS17575 0.23 +2.1
304,469 + ABZR87_RS17575 0.27 +1.0
304,481 + ABZR87_RS17575 0.28 -2.7
304,481 + ABZR87_RS17575 0.28 +0.5
304,481 + ABZR87_RS17575 0.28 -0.2
304,481 + ABZR87_RS17575 0.28 +0.0
304,481 + ABZR87_RS17575 0.28 +1.3
304,482 - ABZR87_RS17575 0.28 +0.3
304,706 + ABZR87_RS17575 0.45 +1.8
304,706 + ABZR87_RS17575 0.45 -0.3
304,707 - ABZR87_RS17575 0.45 +2.1
304,763 + ABZR87_RS17575 0.49 +1.7
304,763 + ABZR87_RS17575 0.49 -2.1
304,764 - ABZR87_RS17575 0.50 +1.0
304,764 - ABZR87_RS17575 0.50 +1.4
304,764 - ABZR87_RS17575 0.50 -0.4
304,874 + ABZR87_RS17575 0.58 +1.2
304,874 + ABZR87_RS17575 0.58 -0.4
304,875 - ABZR87_RS17575 0.58 -0.9
304,875 - ABZR87_RS17575 0.58 +1.6
304,875 - ABZR87_RS17575 0.58 -2.2
304,889 + ABZR87_RS17575 0.59 -0.7
304,890 - ABZR87_RS17575 0.59 +0.3
304,916 + ABZR87_RS17575 0.61 -2.3
304,916 + ABZR87_RS17575 0.61 +2.2
304,916 + ABZR87_RS17575 0.61 -0.7
305,141 + ABZR87_RS17575 0.78 +0.9
305,141 + ABZR87_RS17575 0.78 +0.7
305,141 + ABZR87_RS17575 0.78 -2.0
305,141 + ABZR87_RS17575 0.78 -1.2
305,141 + ABZR87_RS17575 0.78 +2.0
305,141 + ABZR87_RS17575 0.78 -2.1
305,141 + ABZR87_RS17575 0.78 -0.7
305,141 + ABZR87_RS17575 0.78 +1.6
305,141 + ABZR87_RS17575 0.78 +0.2
305,142 - ABZR87_RS17575 0.78 +0.4
305,142 - ABZR87_RS17575 0.78 +1.5
305,142 - ABZR87_RS17575 0.78 -2.6
305,142 - ABZR87_RS17575 0.78 +0.4
305,374 + -1.7
305,487 - +2.1
305,487 - +1.4
305,882 + ABZR87_RS17580 0.32 +3.0
305,882 + ABZR87_RS17580 0.32 +0.6
305,882 + ABZR87_RS17580 0.32 -3.2
305,883 - ABZR87_RS17580 0.32 -0.1
305,886 + ABZR87_RS17580 0.32 -3.0
305,886 + ABZR87_RS17580 0.32 +0.5
305,886 + ABZR87_RS17580 0.32 -1.9
305,886 + ABZR87_RS17580 0.32 -0.7
305,886 + ABZR87_RS17580 0.32 -0.9
305,886 + ABZR87_RS17580 0.32 -0.0
305,887 - ABZR87_RS17580 0.32 +1.1
305,887 - ABZR87_RS17580 0.32 +3.2
305,887 - ABZR87_RS17580 0.32 +0.4
305,887 - ABZR87_RS17580 0.32 -0.4
305,887 - ABZR87_RS17580 0.32 +0.9
306,055 - ABZR87_RS17580 0.44 +0.1
306,055 - ABZR87_RS17580 0.44 +0.2
306,055 - ABZR87_RS17580 0.44 +2.4
306,234 + ABZR87_RS17580 0.57 +0.2
306,234 + ABZR87_RS17580 0.57 +1.4
306,273 + ABZR87_RS17580 0.60 -1.3
306,274 - ABZR87_RS17580 0.60 +0.2
306,282 + ABZR87_RS17580 0.61 -0.2
306,339 + ABZR87_RS17580 0.65 -2.8
306,340 - ABZR87_RS17580 0.65 +1.4

Or see this region's nucleotide sequence