Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17510

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17500 and ABZR87_RS17505 overlap by 4 nucleotidesABZR87_RS17505 and ABZR87_RS17510 are separated by 5 nucleotidesABZR87_RS17510 and ABZR87_RS17515 are separated by 272 nucleotides ABZR87_RS17500: ABZR87_RS17500 - molybdopterin cofactor-binding domain-containing protein, at 287,410 to 290,244 _RS17500 ABZR87_RS17505: ABZR87_RS17505 - (2Fe-2S)-binding protein, at 290,241 to 290,801 _RS17505 ABZR87_RS17510: ABZR87_RS17510 - cytochrome c, at 290,807 to 292,087 _RS17510 ABZR87_RS17515: ABZR87_RS17515 - voltage-gated chloride channel family protein, at 292,360 to 293,640 _RS17515 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 289.807 kb on + strand, within ABZR87_RS17500at 289.807 kb on + strand, within ABZR87_RS17500at 289.807 kb on + strand, within ABZR87_RS17500at 289.808 kb on - strand, within ABZR87_RS17500at 289.808 kb on - strand, within ABZR87_RS17500at 289.907 kb on + strand, within ABZR87_RS17500at 289.991 kb on - strandat 290.033 kb on - strandat 290.033 kb on - strandat 290.249 kb on + strandat 290.249 kb on + strandat 290.249 kb on + strandat 290.249 kb on + strandat 290.250 kb on - strandat 290.250 kb on - strandat 290.282 kb on + strandat 290.283 kb on - strandat 290.283 kb on - strandat 290.285 kb on - strandat 290.352 kb on + strand, within ABZR87_RS17505at 290.352 kb on + strand, within ABZR87_RS17505at 290.353 kb on - strand, within ABZR87_RS17505at 290.598 kb on + strand, within ABZR87_RS17505at 290.731 kb on - strand, within ABZR87_RS17505at 290.826 kb on + strandat 291.075 kb on - strand, within ABZR87_RS17510at 291.075 kb on - strand, within ABZR87_RS17510at 291.137 kb on + strand, within ABZR87_RS17510at 291.194 kb on + strand, within ABZR87_RS17510at 291.194 kb on + strand, within ABZR87_RS17510at 291.195 kb on - strand, within ABZR87_RS17510at 291.203 kb on + strand, within ABZR87_RS17510at 291.204 kb on - strand, within ABZR87_RS17510at 291.239 kb on + strand, within ABZR87_RS17510at 291.240 kb on - strand, within ABZR87_RS17510at 291.240 kb on - strand, within ABZR87_RS17510at 291.240 kb on - strand, within ABZR87_RS17510at 291.246 kb on - strand, within ABZR87_RS17510at 291.308 kb on + strand, within ABZR87_RS17510at 291.308 kb on + strand, within ABZR87_RS17510at 291.309 kb on - strand, within ABZR87_RS17510at 291.309 kb on - strand, within ABZR87_RS17510at 291.632 kb on + strand, within ABZR87_RS17510at 291.633 kb on - strand, within ABZR87_RS17510at 291.633 kb on - strand, within ABZR87_RS17510at 291.659 kb on + strand, within ABZR87_RS17510at 291.695 kb on + strand, within ABZR87_RS17510at 291.695 kb on + strand, within ABZR87_RS17510at 291.695 kb on + strand, within ABZR87_RS17510at 291.695 kb on + strand, within ABZR87_RS17510at 291.696 kb on - strand, within ABZR87_RS17510at 291.696 kb on - strand, within ABZR87_RS17510at 291.696 kb on - strand, within ABZR87_RS17510at 291.696 kb on - strand, within ABZR87_RS17510at 291.696 kb on - strand, within ABZR87_RS17510at 291.791 kb on + strand, within ABZR87_RS17510at 291.791 kb on + strand, within ABZR87_RS17510at 291.791 kb on + strand, within ABZR87_RS17510at 291.896 kb on - strand, within ABZR87_RS17510at 292.016 kb on + strandat 292.017 kb on - strandat 292.086 kb on - strandat 292.233 kb on + strandat 292.274 kb on + strandat 292.274 kb on + strandat 292.274 kb on + strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.275 kb on - strandat 292.301 kb on - strandat 292.301 kb on - strandat 292.301 kb on - strandat 292.405 kb on + strandat 292.470 kb on - strandat 292.567 kb on + strand, within ABZR87_RS17515at 292.568 kb on - strand, within ABZR87_RS17515at 292.568 kb on - strand, within ABZR87_RS17515at 292.573 kb on + strand, within ABZR87_RS17515at 292.573 kb on + strand, within ABZR87_RS17515at 292.573 kb on + strand, within ABZR87_RS17515at 292.573 kb on + strand, within ABZR87_RS17515at 292.574 kb on - strand, within ABZR87_RS17515at 292.574 kb on - strand, within ABZR87_RS17515at 292.574 kb on - strand, within ABZR87_RS17515at 292.574 kb on - strand, within ABZR87_RS17515at 292.756 kb on + strand, within ABZR87_RS17515at 292.756 kb on + strand, within ABZR87_RS17515at 292.757 kb on - strand, within ABZR87_RS17515at 292.984 kb on + strand, within ABZR87_RS17515at 292.985 kb on - strand, within ABZR87_RS17515

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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289,807 + ABZR87_RS17500 0.85 -0.5
289,807 + ABZR87_RS17500 0.85 -0.4
289,807 + ABZR87_RS17500 0.85 -0.8
289,808 - ABZR87_RS17500 0.85 +1.2
289,808 - ABZR87_RS17500 0.85 -2.4
289,907 + ABZR87_RS17500 0.88 -0.2
289,991 - -3.4
290,033 - -1.9
290,033 - -3.7
290,249 + -1.5
290,249 + +0.5
290,249 + -1.4
290,249 + -0.0
290,250 - -0.7
290,250 - +0.6
290,282 + +1.5
290,283 - -2.3
290,283 - -1.2
290,285 - +1.6
290,352 + ABZR87_RS17505 0.20 +0.6
290,352 + ABZR87_RS17505 0.20 +0.3
290,353 - ABZR87_RS17505 0.20 +1.5
290,598 + ABZR87_RS17505 0.64 +0.2
290,731 - ABZR87_RS17505 0.87 -3.8
290,826 + +0.1
291,075 - ABZR87_RS17510 0.21 -1.6
291,075 - ABZR87_RS17510 0.21 +2.2
291,137 + ABZR87_RS17510 0.26 +1.3
291,194 + ABZR87_RS17510 0.30 +0.6
291,194 + ABZR87_RS17510 0.30 -2.5
291,195 - ABZR87_RS17510 0.30 +1.0
291,203 + ABZR87_RS17510 0.31 +0.9
291,204 - ABZR87_RS17510 0.31 -1.8
291,239 + ABZR87_RS17510 0.34 -1.7
291,240 - ABZR87_RS17510 0.34 -1.4
291,240 - ABZR87_RS17510 0.34 -0.7
291,240 - ABZR87_RS17510 0.34 -0.7
291,246 - ABZR87_RS17510 0.34 +1.6
291,308 + ABZR87_RS17510 0.39 -0.9
291,308 + ABZR87_RS17510 0.39 -1.4
291,309 - ABZR87_RS17510 0.39 +0.4
291,309 - ABZR87_RS17510 0.39 -3.2
291,632 + ABZR87_RS17510 0.64 -1.5
291,633 - ABZR87_RS17510 0.64 +0.6
291,633 - ABZR87_RS17510 0.64 +0.2
291,659 + ABZR87_RS17510 0.67 +1.1
291,695 + ABZR87_RS17510 0.69 -0.8
291,695 + ABZR87_RS17510 0.69 -0.6
291,695 + ABZR87_RS17510 0.69 -1.9
291,695 + ABZR87_RS17510 0.69 -0.1
291,696 - ABZR87_RS17510 0.69 +1.2
291,696 - ABZR87_RS17510 0.69 -0.5
291,696 - ABZR87_RS17510 0.69 -0.1
291,696 - ABZR87_RS17510 0.69 +0.8
291,696 - ABZR87_RS17510 0.69 +0.9
291,791 + ABZR87_RS17510 0.77 +0.8
291,791 + ABZR87_RS17510 0.77 -0.9
291,791 + ABZR87_RS17510 0.77 +2.3
291,896 - ABZR87_RS17510 0.85 +1.4
292,016 + +0.5
292,017 - -0.7
292,086 - +1.9
292,233 + -2.3
292,274 + +1.0
292,274 + +2.1
292,274 + +0.3
292,275 - -3.4
292,275 - +1.2
292,275 - -1.9
292,275 - -0.5
292,275 - +0.7
292,275 - +2.9
292,275 - +1.0
292,301 - -0.2
292,301 - -1.5
292,301 - +0.9
292,405 + -1.7
292,470 - -2.2
292,567 + ABZR87_RS17515 0.16 -0.7
292,568 - ABZR87_RS17515 0.16 -0.9
292,568 - ABZR87_RS17515 0.16 +1.9
292,573 + ABZR87_RS17515 0.17 +1.6
292,573 + ABZR87_RS17515 0.17 +3.4
292,573 + ABZR87_RS17515 0.17 -0.4
292,573 + ABZR87_RS17515 0.17 +0.4
292,574 - ABZR87_RS17515 0.17 +2.6
292,574 - ABZR87_RS17515 0.17 +0.3
292,574 - ABZR87_RS17515 0.17 +1.2
292,574 - ABZR87_RS17515 0.17 -0.1
292,756 + ABZR87_RS17515 0.31 +1.2
292,756 + ABZR87_RS17515 0.31 -1.7
292,757 - ABZR87_RS17515 0.31 -0.1
292,984 + ABZR87_RS17515 0.49 -3.2
292,985 - ABZR87_RS17515 0.49 +0.9

Or see this region's nucleotide sequence