Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17015

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17005 and ABZR87_RS17010 are separated by 90 nucleotidesABZR87_RS17010 and ABZR87_RS17015 are separated by 16 nucleotidesABZR87_RS17015 and ABZR87_RS17020 are separated by 207 nucleotidesABZR87_RS17020 and ABZR87_RS17025 are separated by 165 nucleotides ABZR87_RS17005: ABZR87_RS17005 - PLP-dependent aminotransferase family protein, at 166,597 to 167,934 _RS17005 ABZR87_RS17010: ABZR87_RS17010 - cytochrome c, at 168,025 to 168,885 _RS17010 ABZR87_RS17015: ABZR87_RS17015 - DUF1697 domain-containing protein, at 168,902 to 169,411 _RS17015 ABZR87_RS17020: ABZR87_RS17020 - hypothetical protein, at 169,619 to 170,053 _RS17020 ABZR87_RS17025: ABZR87_RS17025 - FAD-containing oxidoreductase, at 170,219 to 171,598 _RS17025 Position (kb) 168 169 170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 167.967 kb on - strandat 167.967 kb on - strandat 168.326 kb on - strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.701 kb on - strand, within ABZR87_RS17010at 168.715 kb on + strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.903 kb on + strandat 168.904 kb on - strandat 169.008 kb on + strand, within ABZR87_RS17015at 169.017 kb on + strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.213 kb on - strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.304 kb on + strand, within ABZR87_RS17015at 169.304 kb on + strand, within ABZR87_RS17015at 169.305 kb on - strand, within ABZR87_RS17015at 169.401 kb on + strandat 169.401 kb on + strandat 169.402 kb on - strandat 169.402 kb on - strandat 169.402 kb on - strandat 169.442 kb on + strandat 169.443 kb on - strandat 169.443 kb on - strandat 169.454 kb on - strandat 169.470 kb on + strandat 169.470 kb on + strandat 169.471 kb on - strandat 169.505 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.606 kb on + strandat 170.018 kb on + strandat 170.176 kb on + strandat 170.211 kb on - strandat 170.390 kb on + strand, within ABZR87_RS17025at 170.390 kb on + strand, within ABZR87_RS17025at 170.390 kb on + strand, within ABZR87_RS17025at 170.391 kb on - strand, within ABZR87_RS17025

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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167,967 - -3.6
167,967 - +1.0
168,326 - ABZR87_RS17010 0.35 +0.4
168,511 + ABZR87_RS17010 0.56 -0.2
168,511 + ABZR87_RS17010 0.56 +0.1
168,511 + ABZR87_RS17010 0.56 +1.1
168,511 + ABZR87_RS17010 0.56 +1.7
168,511 + ABZR87_RS17010 0.56 +3.3
168,511 + ABZR87_RS17010 0.56 -1.2
168,512 - ABZR87_RS17010 0.57 -1.8
168,512 - ABZR87_RS17010 0.57 -0.7
168,512 - ABZR87_RS17010 0.57 -0.9
168,512 - ABZR87_RS17010 0.57 -0.2
168,700 + ABZR87_RS17010 0.78 +0.8
168,700 + ABZR87_RS17010 0.78 +2.8
168,701 - ABZR87_RS17010 0.79 +1.0
168,715 + ABZR87_RS17010 0.80 +1.3
168,716 - ABZR87_RS17010 0.80 +1.8
168,716 - ABZR87_RS17010 0.80 +3.4
168,903 + -3.4
168,904 - -0.7
169,008 + ABZR87_RS17015 0.21 +2.3
169,017 + ABZR87_RS17015 0.23 +0.7
169,018 - ABZR87_RS17015 0.23 +1.7
169,018 - ABZR87_RS17015 0.23 +3.7
169,018 - ABZR87_RS17015 0.23 +2.0
169,018 - ABZR87_RS17015 0.23 +0.2
169,018 - ABZR87_RS17015 0.23 +1.7
169,096 + ABZR87_RS17015 0.38 +1.7
169,096 + ABZR87_RS17015 0.38 -0.5
169,096 + ABZR87_RS17015 0.38 -2.7
169,096 + ABZR87_RS17015 0.38 -0.3
169,212 + ABZR87_RS17015 0.61 +0.8
169,212 + ABZR87_RS17015 0.61 +0.2
169,212 + ABZR87_RS17015 0.61 +0.1
169,213 - ABZR87_RS17015 0.61 +0.7
169,296 + ABZR87_RS17015 0.77 -0.0
169,296 + ABZR87_RS17015 0.77 +1.0
169,296 + ABZR87_RS17015 0.77 -2.7
169,296 + ABZR87_RS17015 0.77 -0.9
169,296 + ABZR87_RS17015 0.77 -1.9
169,296 + ABZR87_RS17015 0.77 -1.4
169,296 + ABZR87_RS17015 0.77 -0.9
169,296 + ABZR87_RS17015 0.77 +1.9
169,296 + ABZR87_RS17015 0.77 -3.3
169,297 - ABZR87_RS17015 0.77 +0.3
169,297 - ABZR87_RS17015 0.77 -2.0
169,297 - ABZR87_RS17015 0.77 +2.3
169,297 - ABZR87_RS17015 0.77 +1.2
169,297 - ABZR87_RS17015 0.77 -0.7
169,297 - ABZR87_RS17015 0.77 -3.2
169,297 - ABZR87_RS17015 0.77 +0.4
169,297 - ABZR87_RS17015 0.77 +0.1
169,297 - ABZR87_RS17015 0.77 -1.2
169,304 + ABZR87_RS17015 0.79 +2.0
169,304 + ABZR87_RS17015 0.79 +0.3
169,305 - ABZR87_RS17015 0.79 +1.3
169,401 + -2.6
169,401 + -3.5
169,402 - -2.9
169,402 - +1.5
169,402 - +0.8
169,442 + +0.1
169,443 - -0.7
169,443 - -1.7
169,454 - -1.2
169,470 + -0.1
169,470 + -2.2
169,471 - +1.2
169,505 + +0.2
169,529 + -1.8
169,529 + -0.3
169,529 + +1.6
169,529 + -0.0
169,529 + -1.8
169,529 + -2.9
169,530 - +0.7
169,530 - -0.3
169,530 - +0.3
169,530 - -2.0
169,606 + -2.7
170,018 + +1.1
170,176 + -2.4
170,211 - -0.1
170,390 + ABZR87_RS17025 0.12 +0.8
170,390 + ABZR87_RS17025 0.12 +1.4
170,390 + ABZR87_RS17025 0.12 -4.1
170,391 - ABZR87_RS17025 0.12 -0.9

Or see this region's nucleotide sequence