Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17000

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16990 and ABZR87_RS16995 are separated by 5 nucleotidesABZR87_RS16995 and ABZR87_RS17000 are separated by 74 nucleotidesABZR87_RS17000 and ABZR87_RS17005 are separated by 87 nucleotides ABZR87_RS16990: ABZR87_RS16990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 164,580 to 165,371 _RS16990 ABZR87_RS16995: ABZR87_RS16995 - lysozyme inhibitor LprI family protein, at 165,377 to 165,832 _RS16995 ABZR87_RS17000: ABZR87_RS17000 - DJ-1/PfpI family protein, at 165,907 to 166,509 _RS17000 ABZR87_RS17005: ABZR87_RS17005 - PLP-dependent aminotransferase family protein, at 166,597 to 167,934 _RS17005 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 165.321 kb on + strandat 165.321 kb on + strandat 165.378 kb on + strandat 165.378 kb on + strandat 165.379 kb on - strandat 165.399 kb on + strandat 165.399 kb on + strandat 165.400 kb on - strandat 165.483 kb on + strand, within ABZR87_RS16995at 165.484 kb on - strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.598 kb on + strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.853 kb on - strandat 165.853 kb on - strandat 165.883 kb on - strandat 165.949 kb on + strandat 165.949 kb on + strandat 165.950 kb on - strandat 165.954 kb on - strandat 165.954 kb on - strandat 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.984 kb on - strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.159 kb on - strand, within ABZR87_RS17000at 166.199 kb on - strand, within ABZR87_RS17000at 166.534 kb on + strandat 166.546 kb on + strandat 166.547 kb on - strandat 166.547 kb on - strandat 166.562 kb on + strandat 166.563 kb on - strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.585 kb on + strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.612 kb on + strandat 166.741 kb on + strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005at 166.848 kb on - strand, within ABZR87_RS17005at 166.879 kb on + strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.967 kb on - strand, within ABZR87_RS17005at 166.967 kb on - strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.146 kb on + strand, within ABZR87_RS17005at 167.147 kb on - strand, within ABZR87_RS17005at 167.272 kb on + strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.386 kb on + strand, within ABZR87_RS17005at 167.387 kb on - strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.478 kb on + strand, within ABZR87_RS17005

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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165,321 + -0.5
165,321 + +0.0
165,378 + -0.2
165,378 + -0.5
165,379 - -1.3
165,399 + +2.7
165,399 + +0.1
165,400 - +0.1
165,483 + ABZR87_RS16995 0.23 -0.3
165,484 - ABZR87_RS16995 0.23 -2.9
165,594 + ABZR87_RS16995 0.48 +1.1
165,594 + ABZR87_RS16995 0.48 +0.3
165,594 + ABZR87_RS16995 0.48 -0.7
165,594 + ABZR87_RS16995 0.48 -3.1
165,594 + ABZR87_RS16995 0.48 -0.2
165,594 + ABZR87_RS16995 0.48 +1.0
165,594 + ABZR87_RS16995 0.48 -3.3
165,594 + ABZR87_RS16995 0.48 -1.3
165,594 + ABZR87_RS16995 0.48 +2.2
165,595 - ABZR87_RS16995 0.48 -2.2
165,595 - ABZR87_RS16995 0.48 -1.3
165,595 - ABZR87_RS16995 0.48 +4.0
165,595 - ABZR87_RS16995 0.48 +1.8
165,595 - ABZR87_RS16995 0.48 -0.9
165,595 - ABZR87_RS16995 0.48 +1.4
165,595 - ABZR87_RS16995 0.48 +1.7
165,595 - ABZR87_RS16995 0.48 +1.6
165,598 + ABZR87_RS16995 0.48 -0.3
165,599 - ABZR87_RS16995 0.49 -1.5
165,599 - ABZR87_RS16995 0.49 +1.5
165,599 - ABZR87_RS16995 0.49 -1.9
165,599 - ABZR87_RS16995 0.49 -2.9
165,690 + ABZR87_RS16995 0.69 +1.2
165,690 + ABZR87_RS16995 0.69 +0.6
165,690 + ABZR87_RS16995 0.69 +1.0
165,690 + ABZR87_RS16995 0.69 +0.9
165,691 - ABZR87_RS16995 0.69 +1.2
165,691 - ABZR87_RS16995 0.69 -1.3
165,853 - +0.7
165,853 - -1.3
165,883 - -0.3
165,949 + +0.5
165,949 + -1.9
165,950 - +2.1
165,954 - -3.5
165,954 - +1.1
165,983 + ABZR87_RS17000 0.13 +1.7
165,983 + ABZR87_RS17000 0.13 +0.6
165,983 + ABZR87_RS17000 0.13 -0.7
165,984 - ABZR87_RS17000 0.13 +0.6
166,094 + ABZR87_RS17000 0.31 -0.7
166,094 + ABZR87_RS17000 0.31 +0.2
166,094 + ABZR87_RS17000 0.31 -0.6
166,159 - ABZR87_RS17000 0.42 -2.5
166,199 - ABZR87_RS17000 0.48 -1.4
166,534 + -2.9
166,546 + +1.2
166,547 - -0.4
166,547 - -0.2
166,562 + -1.0
166,563 - +1.0
166,582 + -2.3
166,582 + -0.8
166,582 + +1.8
166,582 + -0.1
166,585 + +0.2
166,586 - -1.5
166,586 - -0.0
166,586 - -2.9
166,612 + -0.6
166,741 + ABZR87_RS17005 0.11 -1.1
166,742 - ABZR87_RS17005 0.11 +2.0
166,742 - ABZR87_RS17005 0.11 +1.7
166,848 - ABZR87_RS17005 0.19 -3.0
166,879 + ABZR87_RS17005 0.21 +2.7
166,880 - ABZR87_RS17005 0.21 +0.9
166,880 - ABZR87_RS17005 0.21 -1.3
166,880 - ABZR87_RS17005 0.21 -1.1
166,967 - ABZR87_RS17005 0.28 -2.3
166,967 - ABZR87_RS17005 0.28 -2.0
167,054 + ABZR87_RS17005 0.34 -2.1
167,054 + ABZR87_RS17005 0.34 +2.6
167,054 + ABZR87_RS17005 0.34 +1.1
167,054 + ABZR87_RS17005 0.34 +0.2
167,054 + ABZR87_RS17005 0.34 -0.8
167,054 + ABZR87_RS17005 0.34 -2.7
167,054 + ABZR87_RS17005 0.34 +1.2
167,054 + ABZR87_RS17005 0.34 +2.0
167,055 - ABZR87_RS17005 0.34 +3.8
167,055 - ABZR87_RS17005 0.34 +0.7
167,055 - ABZR87_RS17005 0.34 +0.5
167,146 + ABZR87_RS17005 0.41 -2.5
167,147 - ABZR87_RS17005 0.41 -3.4
167,272 + ABZR87_RS17005 0.50 +0.9
167,273 - ABZR87_RS17005 0.51 -0.3
167,273 - ABZR87_RS17005 0.51 +2.5
167,386 + ABZR87_RS17005 0.59 +0.7
167,387 - ABZR87_RS17005 0.59 +1.0
167,449 + ABZR87_RS17005 0.64 -2.2
167,449 + ABZR87_RS17005 0.64 +1.7
167,450 - ABZR87_RS17005 0.64 -1.5
167,450 - ABZR87_RS17005 0.64 -1.4
167,450 - ABZR87_RS17005 0.64 -0.3
167,478 + ABZR87_RS17005 0.66 +1.7

Or see this region's nucleotide sequence