Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16760

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16755 and ABZR87_RS16760 are separated by 239 nucleotidesABZR87_RS16760 and ABZR87_RS16765 are separated by 23 nucleotidesABZR87_RS16765 and ABZR87_RS16770 are separated by 205 nucleotides ABZR87_RS16755: ABZR87_RS16755 - HD-GYP domain-containing protein, at 110,215 to 110,982 _RS16755 ABZR87_RS16760: ABZR87_RS16760 - GGDEF domain-containing protein, at 111,222 to 112,568 _RS16760 ABZR87_RS16765: ABZR87_RS16765 - isochorismatase family cysteine hydrolase, at 112,592 to 113,161 _RS16765 ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 110.398 kb on + strand, within ABZR87_RS16755at 110.446 kb on + strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.529 kb on - strand, within ABZR87_RS16755at 110.529 kb on - strand, within ABZR87_RS16755at 110.562 kb on - strand, within ABZR87_RS16755at 110.891 kb on + strand, within ABZR87_RS16755at 110.891 kb on + strand, within ABZR87_RS16755at 110.892 kb on - strand, within ABZR87_RS16755at 110.899 kb on + strand, within ABZR87_RS16755at 110.967 kb on + strandat 110.967 kb on + strandat 110.967 kb on + strandat 110.968 kb on - strandat 110.968 kb on - strandat 110.968 kb on - strandat 111.141 kb on + strandat 111.141 kb on + strandat 111.141 kb on + strandat 111.142 kb on - strandat 111.142 kb on - strandat 111.142 kb on - strandat 111.213 kb on + strandat 111.213 kb on + strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.318 kb on + strandat 111.318 kb on + strandat 111.319 kb on - strandat 111.319 kb on - strandat 111.319 kb on - strandat 111.321 kb on + strandat 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 112.067 kb on + strand, within ABZR87_RS16760at 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.525 kb on - strandat 112.525 kb on - strandat 112.594 kb on - strandat 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.693 kb on - strand, within ABZR87_RS16765at 112.722 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.840 kb on - strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.008 kb on - strand, within ABZR87_RS16765at 113.109 kb on + strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.162 kb on - strandat 113.168 kb on - strandat 113.168 kb on - strandat 113.199 kb on + strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.321 kb on + strandat 113.321 kb on + strandat 113.322 kb on - strandat 113.342 kb on + strandat 113.342 kb on + strandat 113.343 kb on - strandat 113.343 kb on - strandat 113.345 kb on + strandat 113.346 kb on - strandat 113.428 kb on + strandat 113.428 kb on + strandat 113.429 kb on - strandat 113.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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110,398 + ABZR87_RS16755 0.24 -1.8
110,446 + ABZR87_RS16755 0.30 -2.3
110,447 - ABZR87_RS16755 0.30 -1.3
110,447 - ABZR87_RS16755 0.30 -0.7
110,447 - ABZR87_RS16755 0.30 +0.2
110,447 - ABZR87_RS16755 0.30 -2.7
110,447 - ABZR87_RS16755 0.30 -2.0
110,529 - ABZR87_RS16755 0.41 +0.4
110,529 - ABZR87_RS16755 0.41 +0.8
110,562 - ABZR87_RS16755 0.45 -0.8
110,891 + ABZR87_RS16755 0.88 -0.5
110,891 + ABZR87_RS16755 0.88 +0.9
110,892 - ABZR87_RS16755 0.88 -1.9
110,899 + ABZR87_RS16755 0.89 -0.8
110,967 + -1.1
110,967 + -0.3
110,967 + -2.5
110,968 - -0.1
110,968 - -0.7
110,968 - -2.1
111,141 + +1.5
111,141 + +2.0
111,141 + -0.1
111,142 - -0.9
111,142 - +0.6
111,142 - -0.7
111,213 + +0.6
111,213 + +1.3
111,214 - +3.1
111,214 - +0.8
111,214 - -1.3
111,214 - -0.0
111,214 - -0.3
111,214 - -3.4
111,214 - -0.2
111,318 + +1.7
111,318 + -0.9
111,319 - -1.5
111,319 - +1.1
111,319 - -1.2
111,321 + -2.8
111,382 + ABZR87_RS16760 0.12 -0.7
111,382 + ABZR87_RS16760 0.12 +0.8
111,382 + ABZR87_RS16760 0.12 -0.7
111,382 + ABZR87_RS16760 0.12 +2.6
112,067 + ABZR87_RS16760 0.63 +0.6
112,524 + +1.1
112,524 + -3.2
112,524 + -1.5
112,524 + +0.1
112,524 + +1.0
112,524 + +1.5
112,525 - -0.6
112,525 - -0.3
112,594 - +1.0
112,692 + ABZR87_RS16765 0.18 +0.8
112,692 + ABZR87_RS16765 0.18 -1.0
112,692 + ABZR87_RS16765 0.18 +0.6
112,692 + ABZR87_RS16765 0.18 -0.6
112,693 - ABZR87_RS16765 0.18 +0.1
112,722 + ABZR87_RS16765 0.23 +0.6
112,795 + ABZR87_RS16765 0.36 -2.4
112,795 + ABZR87_RS16765 0.36 +2.6
112,795 + ABZR87_RS16765 0.36 -1.7
112,795 + ABZR87_RS16765 0.36 +2.4
112,795 + ABZR87_RS16765 0.36 +0.4
112,796 - ABZR87_RS16765 0.36 +0.1
112,796 - ABZR87_RS16765 0.36 -1.5
112,796 - ABZR87_RS16765 0.36 +0.3
112,796 - ABZR87_RS16765 0.36 -2.5
112,796 - ABZR87_RS16765 0.36 -1.9
112,840 - ABZR87_RS16765 0.44 -2.2
113,007 + ABZR87_RS16765 0.73 -0.5
113,007 + ABZR87_RS16765 0.73 -2.4
113,007 + ABZR87_RS16765 0.73 -1.1
113,008 - ABZR87_RS16765 0.73 -1.2
113,109 + -2.1
113,110 - +1.5
113,110 - +1.5
113,110 - +1.0
113,110 - +3.7
113,161 + -3.7
113,161 + +1.1
113,161 + +4.9
113,161 + -1.2
113,162 - +0.5
113,168 - -3.9
113,168 - -1.9
113,199 + -0.2
113,200 - -0.7
113,200 - +0.6
113,200 - -3.0
113,321 + +1.4
113,321 + +1.2
113,322 - -1.2
113,342 + +1.8
113,342 + -0.7
113,343 - +1.2
113,343 - -0.8
113,345 + +1.8
113,346 - -0.3
113,428 + -1.1
113,428 + +0.2
113,429 - -1.8
113,429 - +2.7

Or see this region's nucleotide sequence