Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16680

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16675 and ABZR87_RS16680 are separated by 107 nucleotidesABZR87_RS16680 and ABZR87_RS16685 are separated by 4 nucleotides ABZR87_RS16675: ABZR87_RS16675 - LysR family transcriptional regulator, at 89,019 to 89,897 _RS16675 ABZR87_RS16680: ABZR87_RS16680 - molybdate ABC transporter substrate-binding protein, at 90,005 to 90,778 _RS16680 ABZR87_RS16685: ABZR87_RS16685 - MFS transporter, at 90,783 to 92,081 _RS16685 Position (kb) 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 89.204 kb on + strand, within ABZR87_RS16675at 89.204 kb on + strand, within ABZR87_RS16675at 89.204 kb on + strand, within ABZR87_RS16675at 89.205 kb on - strand, within ABZR87_RS16675at 89.238 kb on + strand, within ABZR87_RS16675at 89.238 kb on + strand, within ABZR87_RS16675at 89.238 kb on + strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.239 kb on - strand, within ABZR87_RS16675at 89.584 kb on - strand, within ABZR87_RS16675at 89.584 kb on - strand, within ABZR87_RS16675at 89.656 kb on + strand, within ABZR87_RS16675at 89.656 kb on + strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.657 kb on - strand, within ABZR87_RS16675at 89.920 kb on + strandat 89.955 kb on - strandat 89.956 kb on + strandat 89.969 kb on - strandat 89.972 kb on - strandat 90.155 kb on + strand, within ABZR87_RS16680at 90.155 kb on + strand, within ABZR87_RS16680at 90.155 kb on + strand, within ABZR87_RS16680at 90.156 kb on - strand, within ABZR87_RS16680at 90.190 kb on + strand, within ABZR87_RS16680at 90.191 kb on - strand, within ABZR87_RS16680at 90.191 kb on - strand, within ABZR87_RS16680at 90.458 kb on + strand, within ABZR87_RS16680at 90.459 kb on - strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.659 kb on + strand, within ABZR87_RS16680at 90.660 kb on - strand, within ABZR87_RS16680at 90.719 kb on + strandat 90.719 kb on + strandat 90.719 kb on + strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.754 kb on + strandat 90.754 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.759 kb on - strandat 90.759 kb on - strandat 90.901 kb on + strandat 90.901 kb on + strandat 90.901 kb on + strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 91.069 kb on + strand, within ABZR87_RS16685at 91.069 kb on + strand, within ABZR87_RS16685at 91.069 kb on + strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.117 kb on + strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.153 kb on + strand, within ABZR87_RS16685at 91.153 kb on + strand, within ABZR87_RS16685at 91.154 kb on - strand, within ABZR87_RS16685at 91.154 kb on - strand, within ABZR87_RS16685at 91.156 kb on + strand, within ABZR87_RS16685at 91.157 kb on - strand, within ABZR87_RS16685at 91.157 kb on - strand, within ABZR87_RS16685at 91.183 kb on + strand, within ABZR87_RS16685at 91.183 kb on + strand, within ABZR87_RS16685at 91.184 kb on - strand, within ABZR87_RS16685at 91.215 kb on - strand, within ABZR87_RS16685at 91.315 kb on + strand, within ABZR87_RS16685at 91.316 kb on - strand, within ABZR87_RS16685at 91.407 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.469 kb on - strand, within ABZR87_RS16685at 91.469 kb on - strand, within ABZR87_RS16685at 91.515 kb on + strand, within ABZR87_RS16685at 91.516 kb on - strand, within ABZR87_RS16685at 91.516 kb on - strand, within ABZR87_RS16685at 91.576 kb on + strand, within ABZR87_RS16685at 91.576 kb on + strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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89,204 + ABZR87_RS16675 0.21 +0.4
89,204 + ABZR87_RS16675 0.21 -0.2
89,204 + ABZR87_RS16675 0.21 -2.1
89,205 - ABZR87_RS16675 0.21 -1.5
89,238 + ABZR87_RS16675 0.25 +0.8
89,238 + ABZR87_RS16675 0.25 -1.3
89,238 + ABZR87_RS16675 0.25 -1.2
89,239 - ABZR87_RS16675 0.25 +0.2
89,239 - ABZR87_RS16675 0.25 -0.3
89,239 - ABZR87_RS16675 0.25 -1.9
89,239 - ABZR87_RS16675 0.25 +1.4
89,239 - ABZR87_RS16675 0.25 +2.7
89,239 - ABZR87_RS16675 0.25 +3.1
89,584 - ABZR87_RS16675 0.64 -0.1
89,584 - ABZR87_RS16675 0.64 -2.9
89,656 + ABZR87_RS16675 0.72 +0.7
89,656 + ABZR87_RS16675 0.72 +0.3
89,657 - ABZR87_RS16675 0.73 +1.9
89,657 - ABZR87_RS16675 0.73 +1.9
89,657 - ABZR87_RS16675 0.73 -2.1
89,657 - ABZR87_RS16675 0.73 +2.7
89,657 - ABZR87_RS16675 0.73 -1.3
89,657 - ABZR87_RS16675 0.73 +0.5
89,920 + -0.2
89,955 - +0.8
89,956 + -0.8
89,969 - -0.1
89,972 - -0.4
90,155 + ABZR87_RS16680 0.19 -1.5
90,155 + ABZR87_RS16680 0.19 +0.9
90,155 + ABZR87_RS16680 0.19 -1.3
90,156 - ABZR87_RS16680 0.20 +0.8
90,190 + ABZR87_RS16680 0.24 +1.1
90,191 - ABZR87_RS16680 0.24 -0.9
90,191 - ABZR87_RS16680 0.24 -0.7
90,458 + ABZR87_RS16680 0.59 +1.4
90,459 - ABZR87_RS16680 0.59 -3.0
90,548 + ABZR87_RS16680 0.70 -0.0
90,548 + ABZR87_RS16680 0.70 -2.6
90,548 + ABZR87_RS16680 0.70 +0.5
90,548 + ABZR87_RS16680 0.70 -0.9
90,548 + ABZR87_RS16680 0.70 -0.9
90,549 - ABZR87_RS16680 0.70 -0.7
90,549 - ABZR87_RS16680 0.70 -0.3
90,549 - ABZR87_RS16680 0.70 +0.4
90,549 - ABZR87_RS16680 0.70 -2.9
90,549 - ABZR87_RS16680 0.70 -2.2
90,549 - ABZR87_RS16680 0.70 -1.5
90,659 + ABZR87_RS16680 0.84 -0.3
90,660 - ABZR87_RS16680 0.85 -3.5
90,719 + +0.5
90,719 + -0.2
90,719 + -1.3
90,720 - -2.3
90,720 - +0.2
90,720 - -2.3
90,720 - -3.5
90,720 - +1.7
90,754 + +1.7
90,754 + -0.8
90,758 + +2.0
90,758 + -0.3
90,758 + +0.9
90,758 + +0.7
90,759 - +1.9
90,759 - -1.2
90,901 + -1.1
90,901 + +1.2
90,901 + +1.4
90,902 - -1.9
90,902 - -1.4
90,902 - +1.5
90,902 - -2.1
90,902 - -0.2
90,902 - -1.6
91,069 + ABZR87_RS16685 0.22 +1.8
91,069 + ABZR87_RS16685 0.22 +1.5
91,069 + ABZR87_RS16685 0.22 -0.7
91,070 - ABZR87_RS16685 0.22 +1.1
91,070 - ABZR87_RS16685 0.22 -1.7
91,070 - ABZR87_RS16685 0.22 +0.2
91,117 + ABZR87_RS16685 0.26 +2.3
91,118 - ABZR87_RS16685 0.26 +0.7
91,118 - ABZR87_RS16685 0.26 +1.7
91,118 - ABZR87_RS16685 0.26 -1.1
91,118 - ABZR87_RS16685 0.26 -1.5
91,118 - ABZR87_RS16685 0.26 -0.7
91,126 + ABZR87_RS16685 0.26 +0.4
91,126 + ABZR87_RS16685 0.26 -1.9
91,126 + ABZR87_RS16685 0.26 -1.4
91,126 + ABZR87_RS16685 0.26 -2.5
91,127 - ABZR87_RS16685 0.26 +1.1
91,127 - ABZR87_RS16685 0.26 -2.6
91,127 - ABZR87_RS16685 0.26 +1.2
91,127 - ABZR87_RS16685 0.26 -0.7
91,127 - ABZR87_RS16685 0.26 -0.2
91,153 + ABZR87_RS16685 0.28 -0.9
91,153 + ABZR87_RS16685 0.28 +2.7
91,154 - ABZR87_RS16685 0.29 +0.8
91,154 - ABZR87_RS16685 0.29 -2.9
91,156 + ABZR87_RS16685 0.29 -4.1
91,157 - ABZR87_RS16685 0.29 -0.4
91,157 - ABZR87_RS16685 0.29 -1.6
91,183 + ABZR87_RS16685 0.31 -0.4
91,183 + ABZR87_RS16685 0.31 +0.3
91,184 - ABZR87_RS16685 0.31 -2.1
91,215 - ABZR87_RS16685 0.33 -3.0
91,315 + ABZR87_RS16685 0.41 +0.7
91,316 - ABZR87_RS16685 0.41 +0.0
91,407 + ABZR87_RS16685 0.48 -0.5
91,468 + ABZR87_RS16685 0.53 +1.4
91,468 + ABZR87_RS16685 0.53 -0.8
91,468 + ABZR87_RS16685 0.53 -0.3
91,468 + ABZR87_RS16685 0.53 -1.3
91,468 + ABZR87_RS16685 0.53 -0.6
91,469 - ABZR87_RS16685 0.53 -3.4
91,469 - ABZR87_RS16685 0.53 -1.1
91,515 + ABZR87_RS16685 0.56 +0.8
91,516 - ABZR87_RS16685 0.56 +1.0
91,516 - ABZR87_RS16685 0.56 +0.1
91,576 + ABZR87_RS16685 0.61 +2.7
91,576 + ABZR87_RS16685 0.61 +2.1
91,577 - ABZR87_RS16685 0.61 -0.1
91,577 - ABZR87_RS16685 0.61 -1.0
91,577 - ABZR87_RS16685 0.61 -1.6
91,577 - ABZR87_RS16685 0.61 -2.2

Or see this region's nucleotide sequence