Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16545

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16535 and ABZR87_RS16540 overlap by 4 nucleotidesABZR87_RS16540 and ABZR87_RS16545 are separated by 17 nucleotidesABZR87_RS16545 and ABZR87_RS16550 are separated by 1 nucleotides ABZR87_RS16535: ABZR87_RS16535 - SDR family NAD(P)-dependent oxidoreductase, at 60,565 to 61,347 _RS16535 ABZR87_RS16540: ABZR87_RS16540 - MarR family transcriptional regulator, at 61,344 to 61,928 _RS16540 ABZR87_RS16545: ABZR87_RS16545 - enoyl-CoA hydratase family protein, at 61,946 to 62,806 _RS16545 ABZR87_RS16550: ABZR87_RS16550 - acyl-CoA dehydrogenase family protein, at 62,808 to 63,983 _RS16550 Position (kb) 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 61.021 kb on + strand, within ABZR87_RS16535at 61.021 kb on + strand, within ABZR87_RS16535at 61.021 kb on + strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.022 kb on - strand, within ABZR87_RS16535at 61.034 kb on - strand, within ABZR87_RS16535at 61.034 kb on - strand, within ABZR87_RS16535at 61.034 kb on - strand, within ABZR87_RS16535at 61.034 kb on - strand, within ABZR87_RS16535at 61.130 kb on - strand, within ABZR87_RS16535at 61.132 kb on - strand, within ABZR87_RS16535at 61.579 kb on - strand, within ABZR87_RS16540at 61.579 kb on - strand, within ABZR87_RS16540at 61.851 kb on + strand, within ABZR87_RS16540at 61.852 kb on - strand, within ABZR87_RS16540at 62.108 kb on + strand, within ABZR87_RS16545at 62.510 kb on + strand, within ABZR87_RS16545at 62.511 kb on - strand, within ABZR87_RS16545at 62.759 kb on + strandat 62.759 kb on + strandat 62.759 kb on + strandat 62.759 kb on + strandat 62.760 kb on - strandat 62.760 kb on - strandat 62.824 kb on - strandat 62.824 kb on - strandat 63.157 kb on - strand, within ABZR87_RS16550at 63.157 kb on - strand, within ABZR87_RS16550at 63.157 kb on - strand, within ABZR87_RS16550at 63.270 kb on + strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.324 kb on + strand, within ABZR87_RS16550at 63.324 kb on + strand, within ABZR87_RS16550at 63.325 kb on - strand, within ABZR87_RS16550

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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61,021 + ABZR87_RS16535 0.58 +2.2
61,021 + ABZR87_RS16535 0.58 +2.4
61,021 + ABZR87_RS16535 0.58 +5.5
61,022 - ABZR87_RS16535 0.58 +1.4
61,022 - ABZR87_RS16535 0.58 -1.1
61,022 - ABZR87_RS16535 0.58 +2.0
61,022 - ABZR87_RS16535 0.58 +1.9
61,022 - ABZR87_RS16535 0.58 +0.3
61,022 - ABZR87_RS16535 0.58 -1.2
61,034 - ABZR87_RS16535 0.60 +1.9
61,034 - ABZR87_RS16535 0.60 -1.9
61,034 - ABZR87_RS16535 0.60 -1.4
61,034 - ABZR87_RS16535 0.60 +0.7
61,130 - ABZR87_RS16535 0.72 -3.5
61,132 - ABZR87_RS16535 0.72 -0.1
61,579 - ABZR87_RS16540 0.40 -1.9
61,579 - ABZR87_RS16540 0.40 +1.0
61,851 + ABZR87_RS16540 0.87 -2.7
61,852 - ABZR87_RS16540 0.87 -0.0
62,108 + ABZR87_RS16545 0.19 -1.0
62,510 + ABZR87_RS16545 0.66 -0.5
62,511 - ABZR87_RS16545 0.66 -3.3
62,759 + -2.0
62,759 + -2.2
62,759 + +1.2
62,759 + -1.8
62,760 - +0.2
62,760 - -0.7
62,824 - +1.5
62,824 - -0.2
63,157 - ABZR87_RS16550 0.30 -0.4
63,157 - ABZR87_RS16550 0.30 +0.1
63,157 - ABZR87_RS16550 0.30 -2.1
63,270 + ABZR87_RS16550 0.39 -0.8
63,271 - ABZR87_RS16550 0.39 +0.6
63,271 - ABZR87_RS16550 0.39 +1.3
63,271 - ABZR87_RS16550 0.39 -2.2
63,271 - ABZR87_RS16550 0.39 -0.1
63,324 + ABZR87_RS16550 0.44 -3.1
63,324 + ABZR87_RS16550 0.44 +0.4
63,325 - ABZR87_RS16550 0.44 -0.0

Or see this region's nucleotide sequence