Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16385

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16375 and ABZR87_RS16380 are separated by 84 nucleotidesABZR87_RS16380 and ABZR87_RS16385 are separated by 123 nucleotidesABZR87_RS16385 and ABZR87_RS16390 overlap by 1 nucleotidesABZR87_RS16390 and ABZR87_RS16395 are separated by 119 nucleotides ABZR87_RS16375: ABZR87_RS16375 - Fe2+-dependent dioxygenase, at 26,575 to 27,261 _RS16375 ABZR87_RS16380: ABZR87_RS16380 - hypothetical protein, at 27,346 to 27,492 _RS16380 ABZR87_RS16385: ABZR87_RS16385 - PEP/pyruvate-binding domain-containing protein, at 27,616 to 30,144 _RS16385 ABZR87_RS16390: ABZR87_RS16390 - TetR/AcrR family transcriptional regulator, at 30,144 to 30,773 _RS16390 ABZR87_RS16395: ABZR87_RS16395 - prolyl aminopeptidase, at 30,893 to 31,846 _RS16395 Position (kb) 27 28 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 26.683 kb on + strand, within ABZR87_RS16375at 26.684 kb on - strand, within ABZR87_RS16375at 26.818 kb on + strand, within ABZR87_RS16375at 26.818 kb on + strand, within ABZR87_RS16375at 26.819 kb on - strand, within ABZR87_RS16375at 26.916 kb on + strand, within ABZR87_RS16375at 26.959 kb on + strand, within ABZR87_RS16375at 26.960 kb on - strand, within ABZR87_RS16375at 26.960 kb on - strand, within ABZR87_RS16375at 26.960 kb on - strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.992 kb on + strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 26.993 kb on - strand, within ABZR87_RS16375at 27.037 kb on + strand, within ABZR87_RS16375at 27.037 kb on + strand, within ABZR87_RS16375at 27.038 kb on - strand, within ABZR87_RS16375at 27.226 kb on + strandat 27.226 kb on + strandat 27.226 kb on + strandat 27.227 kb on - strandat 27.227 kb on - strandat 27.227 kb on - strandat 27.365 kb on + strand, within ABZR87_RS16380at 27.517 kb on + strandat 27.518 kb on - strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.530 kb on - strandat 27.530 kb on - strandat 27.530 kb on - strandat 27.530 kb on - strandat 27.530 kb on - strandat 27.530 kb on - strandat 27.532 kb on + strandat 27.539 kb on + strandat 27.758 kb on + strandat 27.759 kb on - strandat 28.208 kb on + strand, within ABZR87_RS16385at 28.208 kb on + strand, within ABZR87_RS16385at 28.209 kb on - strand, within ABZR87_RS16385at 28.209 kb on - strand, within ABZR87_RS16385at 28.381 kb on + strand, within ABZR87_RS16385at 28.381 kb on + strand, within ABZR87_RS16385at 28.381 kb on + strand, within ABZR87_RS16385at 28.381 kb on + strand, within ABZR87_RS16385at 28.381 kb on + strand, within ABZR87_RS16385at 28.382 kb on - strand, within ABZR87_RS16385at 28.382 kb on - strand, within ABZR87_RS16385at 28.382 kb on - strand, within ABZR87_RS16385at 28.382 kb on - strand, within ABZR87_RS16385at 28.397 kb on + strand, within ABZR87_RS16385at 28.398 kb on + strand, within ABZR87_RS16385at 28.433 kb on + strand, within ABZR87_RS16385at 28.433 kb on + strand, within ABZR87_RS16385at 28.434 kb on - strand, within ABZR87_RS16385at 28.434 kb on - strand, within ABZR87_RS16385at 28.434 kb on - strand, within ABZR87_RS16385at 28.537 kb on - strand, within ABZR87_RS16385at 28.537 kb on - strand, within ABZR87_RS16385at 28.610 kb on + strand, within ABZR87_RS16385at 28.610 kb on + strand, within ABZR87_RS16385at 28.610 kb on + strand, within ABZR87_RS16385at 28.611 kb on - strand, within ABZR87_RS16385at 28.611 kb on - strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.909 kb on + strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.910 kb on - strand, within ABZR87_RS16385at 28.912 kb on - strand, within ABZR87_RS16385at 28.913 kb on + strand, within ABZR87_RS16385at 28.913 kb on + strand, within ABZR87_RS16385at 28.914 kb on - strand, within ABZR87_RS16385at 29.069 kb on + strand, within ABZR87_RS16385at 29.070 kb on - strand, within ABZR87_RS16385at 29.070 kb on - strand, within ABZR87_RS16385at 29.070 kb on - strand, within ABZR87_RS16385at 29.070 kb on - strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.071 kb on + strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.072 kb on - strand, within ABZR87_RS16385at 29.121 kb on - strand, within ABZR87_RS16385at 29.171 kb on + strand, within ABZR87_RS16385at 29.171 kb on + strand, within ABZR87_RS16385at 29.172 kb on - strand, within ABZR87_RS16385at 29.172 kb on - strand, within ABZR87_RS16385at 29.172 kb on - strand, within ABZR87_RS16385at 29.264 kb on + strand, within ABZR87_RS16385at 29.264 kb on + strand, within ABZR87_RS16385at 29.265 kb on - strand, within ABZR87_RS16385at 29.346 kb on - strand, within ABZR87_RS16385at 29.760 kb on - strand, within ABZR87_RS16385at 29.760 kb on - strand, within ABZR87_RS16385at 29.953 kb on - strandat 30.253 kb on + strand, within ABZR87_RS16390at 30.253 kb on + strand, within ABZR87_RS16390at 30.254 kb on - strand, within ABZR87_RS16390at 30.254 kb on - strand, within ABZR87_RS16390at 30.254 kb on - strand, within ABZR87_RS16390at 30.259 kb on + strand, within ABZR87_RS16390at 30.259 kb on + strand, within ABZR87_RS16390at 30.259 kb on + strand, within ABZR87_RS16390at 30.259 kb on + strand, within ABZR87_RS16390at 30.260 kb on - strand, within ABZR87_RS16390at 30.260 kb on - strand, within ABZR87_RS16390at 30.424 kb on + strand, within ABZR87_RS16390at 30.425 kb on - strand, within ABZR87_RS16390at 30.425 kb on - strand, within ABZR87_RS16390at 30.432 kb on + strand, within ABZR87_RS16390at 30.432 kb on + strand, within ABZR87_RS16390at 30.432 kb on + strand, within ABZR87_RS16390at 30.432 kb on + strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.433 kb on - strand, within ABZR87_RS16390at 30.524 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.604 kb on + strand, within ABZR87_RS16390at 30.605 kb on - strand, within ABZR87_RS16390at 30.605 kb on - strand, within ABZR87_RS16390at 30.605 kb on - strand, within ABZR87_RS16390at 30.665 kb on - strand, within ABZR87_RS16390at 30.786 kb on - strandat 30.811 kb on - strandat 30.825 kb on + strandat 30.849 kb on + strandat 30.850 kb on - strandat 30.850 kb on - strandat 30.914 kb on + strandat 30.914 kb on + strandat 30.915 kb on - strandat 30.915 kb on - strandat 30.932 kb on + strandat 30.932 kb on + strandat 30.932 kb on + strandat 30.933 kb on - strandat 30.974 kb on + strandat 30.974 kb on + strandat 30.975 kb on - strandat 30.975 kb on - strandat 30.975 kb on - strandat 30.977 kb on + strandat 30.977 kb on + strandat 30.977 kb on + strandat 30.977 kb on + strandat 30.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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26,683 + ABZR87_RS16375 0.16 -0.4
26,684 - ABZR87_RS16375 0.16 -0.1
26,818 + ABZR87_RS16375 0.35 -1.9
26,818 + ABZR87_RS16375 0.35 -0.5
26,819 - ABZR87_RS16375 0.36 -1.1
26,916 + ABZR87_RS16375 0.50 -2.1
26,959 + ABZR87_RS16375 0.56 -0.5
26,960 - ABZR87_RS16375 0.56 -1.1
26,960 - ABZR87_RS16375 0.56 -1.5
26,960 - ABZR87_RS16375 0.56 +1.3
26,992 + ABZR87_RS16375 0.61 -0.5
26,992 + ABZR87_RS16375 0.61 +0.2
26,992 + ABZR87_RS16375 0.61 -2.2
26,992 + ABZR87_RS16375 0.61 +1.6
26,992 + ABZR87_RS16375 0.61 -1.5
26,992 + ABZR87_RS16375 0.61 +1.8
26,993 - ABZR87_RS16375 0.61 -0.1
26,993 - ABZR87_RS16375 0.61 -2.7
26,993 - ABZR87_RS16375 0.61 -0.4
26,993 - ABZR87_RS16375 0.61 -0.5
26,993 - ABZR87_RS16375 0.61 +0.3
26,993 - ABZR87_RS16375 0.61 -0.5
26,993 - ABZR87_RS16375 0.61 -3.0
27,037 + ABZR87_RS16375 0.67 -1.8
27,037 + ABZR87_RS16375 0.67 +1.0
27,038 - ABZR87_RS16375 0.67 -0.7
27,226 + +1.3
27,226 + -1.9
27,226 + -0.1
27,227 - -3.4
27,227 - +1.6
27,227 - -1.7
27,365 + ABZR87_RS16380 0.13 -0.9
27,517 + -1.3
27,518 - +0.9
27,529 + -1.7
27,529 + -1.7
27,529 + -2.5
27,529 + -1.9
27,529 + +0.7
27,529 + +1.1
27,529 + +1.2
27,529 + -2.7
27,529 + +3.3
27,529 + -2.4
27,529 + +3.0
27,530 - +0.4
27,530 - +1.7
27,530 - -1.3
27,530 - +1.7
27,530 - +0.5
27,530 - -2.7
27,532 + -0.8
27,539 + -0.7
27,758 + -0.9
27,759 - -0.3
28,208 + ABZR87_RS16385 0.23 -3.6
28,208 + ABZR87_RS16385 0.23 -1.3
28,209 - ABZR87_RS16385 0.23 -1.7
28,209 - ABZR87_RS16385 0.23 -2.0
28,381 + ABZR87_RS16385 0.30 +0.9
28,381 + ABZR87_RS16385 0.30 +0.8
28,381 + ABZR87_RS16385 0.30 -4.0
28,381 + ABZR87_RS16385 0.30 -0.4
28,381 + ABZR87_RS16385 0.30 +1.4
28,382 - ABZR87_RS16385 0.30 -1.8
28,382 - ABZR87_RS16385 0.30 -0.1
28,382 - ABZR87_RS16385 0.30 +0.4
28,382 - ABZR87_RS16385 0.30 -0.9
28,397 + ABZR87_RS16385 0.31 -2.7
28,398 + ABZR87_RS16385 0.31 +0.9
28,433 + ABZR87_RS16385 0.32 +2.1
28,433 + ABZR87_RS16385 0.32 -0.6
28,434 - ABZR87_RS16385 0.32 -1.5
28,434 - ABZR87_RS16385 0.32 +1.5
28,434 - ABZR87_RS16385 0.32 +0.3
28,537 - ABZR87_RS16385 0.36 -0.8
28,537 - ABZR87_RS16385 0.36 +1.3
28,610 + ABZR87_RS16385 0.39 -2.8
28,610 + ABZR87_RS16385 0.39 +1.8
28,610 + ABZR87_RS16385 0.39 +0.1
28,611 - ABZR87_RS16385 0.39 +0.9
28,611 - ABZR87_RS16385 0.39 -0.9
28,909 + ABZR87_RS16385 0.51 +0.9
28,909 + ABZR87_RS16385 0.51 -0.3
28,909 + ABZR87_RS16385 0.51 +1.1
28,909 + ABZR87_RS16385 0.51 -3.5
28,909 + ABZR87_RS16385 0.51 -0.2
28,909 + ABZR87_RS16385 0.51 -0.2
28,909 + ABZR87_RS16385 0.51 +0.4
28,909 + ABZR87_RS16385 0.51 +0.5
28,909 + ABZR87_RS16385 0.51 -3.7
28,910 - ABZR87_RS16385 0.51 +0.7
28,910 - ABZR87_RS16385 0.51 -1.5
28,910 - ABZR87_RS16385 0.51 +1.7
28,910 - ABZR87_RS16385 0.51 +1.5
28,910 - ABZR87_RS16385 0.51 +0.2
28,910 - ABZR87_RS16385 0.51 -0.9
28,910 - ABZR87_RS16385 0.51 -1.8
28,912 - ABZR87_RS16385 0.51 +0.8
28,913 + ABZR87_RS16385 0.51 -0.5
28,913 + ABZR87_RS16385 0.51 -1.2
28,914 - ABZR87_RS16385 0.51 +0.7
29,069 + ABZR87_RS16385 0.57 -0.5
29,070 - ABZR87_RS16385 0.57 -2.1
29,070 - ABZR87_RS16385 0.57 +2.7
29,070 - ABZR87_RS16385 0.57 -2.6
29,070 - ABZR87_RS16385 0.57 -0.8
29,071 + ABZR87_RS16385 0.58 -1.5
29,071 + ABZR87_RS16385 0.58 +0.4
29,071 + ABZR87_RS16385 0.58 -1.0
29,071 + ABZR87_RS16385 0.58 -1.9
29,071 + ABZR87_RS16385 0.58 +0.8
29,071 + ABZR87_RS16385 0.58 +2.0
29,071 + ABZR87_RS16385 0.58 -3.8
29,071 + ABZR87_RS16385 0.58 -3.7
29,071 + ABZR87_RS16385 0.58 +1.3
29,071 + ABZR87_RS16385 0.58 -2.1
29,071 + ABZR87_RS16385 0.58 -2.7
29,071 + ABZR87_RS16385 0.58 -0.2
29,071 + ABZR87_RS16385 0.58 -0.5
29,072 - ABZR87_RS16385 0.58 +1.7
29,072 - ABZR87_RS16385 0.58 -0.5
29,072 - ABZR87_RS16385 0.58 -1.6
29,072 - ABZR87_RS16385 0.58 -1.8
29,072 - ABZR87_RS16385 0.58 -0.0
29,072 - ABZR87_RS16385 0.58 +1.0
29,072 - ABZR87_RS16385 0.58 +1.3
29,072 - ABZR87_RS16385 0.58 +0.2
29,121 - ABZR87_RS16385 0.60 -3.6
29,171 + ABZR87_RS16385 0.61 +1.7
29,171 + ABZR87_RS16385 0.61 -0.7
29,172 - ABZR87_RS16385 0.62 -1.1
29,172 - ABZR87_RS16385 0.62 -3.1
29,172 - ABZR87_RS16385 0.62 -1.9
29,264 + ABZR87_RS16385 0.65 +0.1
29,264 + ABZR87_RS16385 0.65 -1.3
29,265 - ABZR87_RS16385 0.65 +1.2
29,346 - ABZR87_RS16385 0.68 +0.2
29,760 - ABZR87_RS16385 0.85 +4.7
29,760 - ABZR87_RS16385 0.85 -2.5
29,953 - -1.3
30,253 + ABZR87_RS16390 0.17 +1.7
30,253 + ABZR87_RS16390 0.17 -0.2
30,254 - ABZR87_RS16390 0.17 -1.2
30,254 - ABZR87_RS16390 0.17 -1.7
30,254 - ABZR87_RS16390 0.17 +0.5
30,259 + ABZR87_RS16390 0.18 +2.3
30,259 + ABZR87_RS16390 0.18 +0.1
30,259 + ABZR87_RS16390 0.18 +1.4
30,259 + ABZR87_RS16390 0.18 +2.8
30,260 - ABZR87_RS16390 0.18 -0.2
30,260 - ABZR87_RS16390 0.18 +0.2
30,424 + ABZR87_RS16390 0.44 +0.1
30,425 - ABZR87_RS16390 0.45 -1.7
30,425 - ABZR87_RS16390 0.45 +1.0
30,432 + ABZR87_RS16390 0.46 -1.6
30,432 + ABZR87_RS16390 0.46 -1.1
30,432 + ABZR87_RS16390 0.46 +3.1
30,432 + ABZR87_RS16390 0.46 +0.0
30,433 - ABZR87_RS16390 0.46 +1.1
30,433 - ABZR87_RS16390 0.46 -2.6
30,433 - ABZR87_RS16390 0.46 -1.3
30,433 - ABZR87_RS16390 0.46 -3.1
30,433 - ABZR87_RS16390 0.46 +1.6
30,433 - ABZR87_RS16390 0.46 -1.9
30,433 - ABZR87_RS16390 0.46 +0.9
30,524 + ABZR87_RS16390 0.60 +0.2
30,604 + ABZR87_RS16390 0.73 +0.6
30,604 + ABZR87_RS16390 0.73 -0.9
30,604 + ABZR87_RS16390 0.73 -0.3
30,604 + ABZR87_RS16390 0.73 +0.4
30,604 + ABZR87_RS16390 0.73 +3.5
30,604 + ABZR87_RS16390 0.73 +2.4
30,604 + ABZR87_RS16390 0.73 -3.2
30,605 - ABZR87_RS16390 0.73 -0.1
30,605 - ABZR87_RS16390 0.73 -3.5
30,605 - ABZR87_RS16390 0.73 -3.8
30,665 - ABZR87_RS16390 0.83 -1.0
30,786 - -3.3
30,811 - +0.8
30,825 + -3.1
30,849 + +0.4
30,850 - +0.1
30,850 - -3.1
30,914 + -0.7
30,914 + -1.2
30,915 - -1.7
30,915 - -1.9
30,932 + +0.7
30,932 + -0.1
30,932 + -1.5
30,933 - +0.4
30,974 + +2.0
30,974 + +0.1
30,975 - -0.2
30,975 - +2.0
30,975 - +1.4
30,977 + +0.1
30,977 + -0.7
30,977 + -2.4
30,977 + -2.5
30,977 + +0.2

Or see this region's nucleotide sequence