Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15390 and ABZR87_RS15395 are separated by 65 nucleotides ABZR87_RS15395 and ABZR87_RS15400 are separated by 71 nucleotides
ABZR87_RS15390: ABZR87_RS15390 - NCS1 family nucleobase:cation symporter-1, at 3,238,530 to 3,240,008
_RS15390
ABZR87_RS15395: ABZR87_RS15395 - uracil phosphoribosyltransferase, at 3,240,074 to 3,240,724
_RS15395
ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361
_RS15400
Position (kb)
3240
3241 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3239.157 kb on + strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.158 kb on - strand, within ABZR87_RS15390 at 3239.277 kb on + strand, within ABZR87_RS15390 at 3239.430 kb on + strand, within ABZR87_RS15390 at 3239.431 kb on - strand, within ABZR87_RS15390 at 3239.431 kb on - strand, within ABZR87_RS15390 at 3239.562 kb on + strand, within ABZR87_RS15390 at 3239.614 kb on - strand, within ABZR87_RS15390 at 3239.614 kb on - strand, within ABZR87_RS15390 at 3239.614 kb on - strand, within ABZR87_RS15390 at 3239.676 kb on + strand, within ABZR87_RS15390 at 3239.676 kb on + strand, within ABZR87_RS15390 at 3239.676 kb on + strand, within ABZR87_RS15390 at 3239.676 kb on + strand, within ABZR87_RS15390 at 3239.676 kb on + strand, within ABZR87_RS15390 at 3239.677 kb on - strand, within ABZR87_RS15390 at 3239.677 kb on - strand, within ABZR87_RS15390 at 3239.677 kb on - strand, within ABZR87_RS15390 at 3239.745 kb on + strand, within ABZR87_RS15390 at 3239.745 kb on + strand, within ABZR87_RS15390 at 3239.745 kb on + strand, within ABZR87_RS15390 at 3239.745 kb on + strand, within ABZR87_RS15390 at 3239.746 kb on - strand, within ABZR87_RS15390 at 3239.746 kb on - strand, within ABZR87_RS15390 at 3239.746 kb on - strand, within ABZR87_RS15390 at 3239.794 kb on + strand, within ABZR87_RS15390 at 3239.812 kb on - strand, within ABZR87_RS15390 at 3239.934 kb on + strand at 3239.934 kb on + strand at 3239.934 kb on - strand at 3239.935 kb on - strand at 3239.935 kb on - strand at 3239.935 kb on - strand at 3239.935 kb on - strand at 3239.940 kb on + strand at 3239.940 kb on + strand at 3239.940 kb on + strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.941 kb on - strand at 3239.979 kb on + strand at 3239.979 kb on + strand at 3239.979 kb on + strand at 3239.979 kb on + strand at 3239.979 kb on + strand at 3239.979 kb on + strand at 3239.980 kb on - strand at 3239.980 kb on - strand at 3239.980 kb on - strand at 3239.980 kb on - strand at 3239.980 kb on - strand at 3240.040 kb on + strand at 3240.040 kb on + strand at 3240.041 kb on - strand at 3240.340 kb on + strand, within ABZR87_RS15395 at 3240.340 kb on + strand, within ABZR87_RS15395 at 3240.668 kb on + strand at 3240.668 kb on + strand at 3240.669 kb on - strand at 3241.472 kb on + strand, within ABZR87_RS15400 at 3241.472 kb on + strand, within ABZR87_RS15400 at 3241.473 kb on - strand, within ABZR87_RS15400 at 3241.662 kb on - strand, within ABZR87_RS15400 at 3241.662 kb on - strand, within ABZR87_RS15400 at 3241.662 kb on - strand, within ABZR87_RS15400 at 3241.662 kb on - strand, within ABZR87_RS15400
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 3,239,157 + ABZR87_RS15390 0.42 +1.5 3,239,158 - ABZR87_RS15390 0.42 -1.1 3,239,158 - ABZR87_RS15390 0.42 +0.8 3,239,158 - ABZR87_RS15390 0.42 +2.1 3,239,158 - ABZR87_RS15390 0.42 -0.9 3,239,158 - ABZR87_RS15390 0.42 +0.4 3,239,158 - ABZR87_RS15390 0.42 +1.1 3,239,158 - ABZR87_RS15390 0.42 +2.0 3,239,158 - ABZR87_RS15390 0.42 +0.5 3,239,277 + ABZR87_RS15390 0.51 +1.5 3,239,430 + ABZR87_RS15390 0.61 -2.0 3,239,431 - ABZR87_RS15390 0.61 +1.4 3,239,431 - ABZR87_RS15390 0.61 +1.4 3,239,562 + ABZR87_RS15390 0.70 -0.8 3,239,614 - ABZR87_RS15390 0.73 -1.1 3,239,614 - ABZR87_RS15390 0.73 +0.1 3,239,614 - ABZR87_RS15390 0.73 +0.6 3,239,676 + ABZR87_RS15390 0.77 +0.8 3,239,676 + ABZR87_RS15390 0.77 +0.8 3,239,676 + ABZR87_RS15390 0.77 +0.1 3,239,676 + ABZR87_RS15390 0.77 -0.9 3,239,676 + ABZR87_RS15390 0.77 +0.7 3,239,677 - ABZR87_RS15390 0.78 +0.9 3,239,677 - ABZR87_RS15390 0.78 +2.1 3,239,677 - ABZR87_RS15390 0.78 -1.4 3,239,745 + ABZR87_RS15390 0.82 +2.2 3,239,745 + ABZR87_RS15390 0.82 -1.0 3,239,745 + ABZR87_RS15390 0.82 +1.0 3,239,745 + ABZR87_RS15390 0.82 -1.5 3,239,746 - ABZR87_RS15390 0.82 +0.9 3,239,746 - ABZR87_RS15390 0.82 +2.3 3,239,746 - ABZR87_RS15390 0.82 +2.7 3,239,794 + ABZR87_RS15390 0.85 -1.4 3,239,812 - ABZR87_RS15390 0.87 +1.1 3,239,934 + +1.2 3,239,934 + +2.2 3,239,934 - +0.8 3,239,935 - -1.2 3,239,935 - +1.3 3,239,935 - -0.9 3,239,935 - +1.5 3,239,940 + -2.1 3,239,940 + +1.7 3,239,940 + +2.2 3,239,941 - +0.0 3,239,941 - +1.4 3,239,941 - -2.4 3,239,941 - -0.9 3,239,941 - -2.0 3,239,941 - +0.7 3,239,941 - +3.9 3,239,941 - -2.6 3,239,979 + +3.6 3,239,979 + +1.2 3,239,979 + +1.4 3,239,979 + +2.1 3,239,979 + -2.6 3,239,979 + +1.7 3,239,980 - +1.1 3,239,980 - +0.6 3,239,980 - +0.4 3,239,980 - -0.0 3,239,980 - -3.1 3,240,040 + -1.3 3,240,040 + +1.8 3,240,041 - -0.5 3,240,340 + ABZR87_RS15395 0.41 +1.5 3,240,340 + ABZR87_RS15395 0.41 -0.0 3,240,668 + +3.2 3,240,668 + -3.6 3,240,669 - +1.3 3,241,472 + ABZR87_RS15400 0.43 +0.7 3,241,472 + ABZR87_RS15400 0.43 -1.7 3,241,473 - ABZR87_RS15400 0.43 +1.6 3,241,662 - ABZR87_RS15400 0.55 +3.8 3,241,662 - ABZR87_RS15400 0.55 +0.6 3,241,662 - ABZR87_RS15400 0.55 +3.0 3,241,662 - ABZR87_RS15400 0.55 -0.7
Or see this region's nucleotide sequence