Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15055

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15050 and ABZR87_RS15055 are separated by 2 nucleotidesABZR87_RS15055 and ABZR87_RS15060 are separated by 17 nucleotides ABZR87_RS15050: ABZR87_RS15050 - xanthine dehydrogenase accessory protein XdhC, at 3,175,417 to 3,176,451 _RS15050 ABZR87_RS15055: ABZR87_RS15055 - adenosine deaminase, at 3,176,454 to 3,177,491 _RS15055 ABZR87_RS15060: ABZR87_RS15060 - guanine deaminase, at 3,177,509 to 3,178,843 _RS15060 Position (kb) 3176 3177 3178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3175.570 kb on + strand, within ABZR87_RS15050at 3175.571 kb on - strand, within ABZR87_RS15050at 3175.677 kb on + strand, within ABZR87_RS15050at 3175.677 kb on + strand, within ABZR87_RS15050at 3176.119 kb on + strand, within ABZR87_RS15050at 3176.119 kb on + strand, within ABZR87_RS15050at 3176.119 kb on + strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.120 kb on - strand, within ABZR87_RS15050at 3176.197 kb on + strand, within ABZR87_RS15050at 3176.198 kb on - strand, within ABZR87_RS15050at 3176.198 kb on - strand, within ABZR87_RS15050at 3176.198 kb on - strand, within ABZR87_RS15050at 3176.271 kb on + strand, within ABZR87_RS15050at 3176.271 kb on + strand, within ABZR87_RS15050at 3176.575 kb on + strand, within ABZR87_RS15055at 3176.576 kb on - strand, within ABZR87_RS15055at 3176.576 kb on - strand, within ABZR87_RS15055at 3176.587 kb on - strand, within ABZR87_RS15055at 3176.606 kb on - strand, within ABZR87_RS15055at 3176.606 kb on - strand, within ABZR87_RS15055at 3176.606 kb on - strand, within ABZR87_RS15055at 3176.652 kb on + strand, within ABZR87_RS15055at 3176.652 kb on + strand, within ABZR87_RS15055at 3176.655 kb on + strand, within ABZR87_RS15055at 3176.655 kb on + strand, within ABZR87_RS15055at 3176.655 kb on + strand, within ABZR87_RS15055at 3176.655 kb on + strand, within ABZR87_RS15055at 3176.656 kb on - strand, within ABZR87_RS15055at 3176.656 kb on - strand, within ABZR87_RS15055at 3176.695 kb on - strand, within ABZR87_RS15055at 3176.712 kb on + strand, within ABZR87_RS15055at 3176.713 kb on - strand, within ABZR87_RS15055at 3176.884 kb on + strand, within ABZR87_RS15055at 3176.885 kb on - strand, within ABZR87_RS15055at 3176.937 kb on + strand, within ABZR87_RS15055at 3176.937 kb on + strand, within ABZR87_RS15055at 3176.937 kb on + strand, within ABZR87_RS15055at 3176.938 kb on - strand, within ABZR87_RS15055at 3176.939 kb on + strand, within ABZR87_RS15055at 3176.940 kb on - strand, within ABZR87_RS15055at 3177.022 kb on + strand, within ABZR87_RS15055at 3177.090 kb on + strand, within ABZR87_RS15055at 3177.090 kb on + strand, within ABZR87_RS15055at 3177.121 kb on + strand, within ABZR87_RS15055at 3177.122 kb on - strand, within ABZR87_RS15055at 3177.330 kb on + strand, within ABZR87_RS15055at 3177.330 kb on + strand, within ABZR87_RS15055at 3177.489 kb on + strandat 3177.587 kb on + strandat 3177.606 kb on - strandat 3177.611 kb on + strandat 3177.611 kb on + strandat 3177.612 kb on - strandat 3177.668 kb on + strand, within ABZR87_RS15060at 3177.716 kb on + strand, within ABZR87_RS15060at 3177.716 kb on + strand, within ABZR87_RS15060at 3177.757 kb on + strand, within ABZR87_RS15060at 3177.757 kb on + strand, within ABZR87_RS15060at 3177.757 kb on + strand, within ABZR87_RS15060at 3177.757 kb on + strand, within ABZR87_RS15060at 3177.758 kb on - strand, within ABZR87_RS15060at 3177.758 kb on - strand, within ABZR87_RS15060at 3177.758 kb on - strand, within ABZR87_RS15060at 3177.758 kb on - strand, within ABZR87_RS15060at 3177.758 kb on - strand, within ABZR87_RS15060at 3177.824 kb on + strand, within ABZR87_RS15060at 3177.825 kb on - strand, within ABZR87_RS15060at 3177.825 kb on - strand, within ABZR87_RS15060at 3177.825 kb on - strand, within ABZR87_RS15060at 3177.863 kb on + strand, within ABZR87_RS15060at 3177.864 kb on - strand, within ABZR87_RS15060at 3178.040 kb on + strand, within ABZR87_RS15060at 3178.041 kb on - strand, within ABZR87_RS15060at 3178.041 kb on - strand, within ABZR87_RS15060at 3178.041 kb on - strand, within ABZR87_RS15060at 3178.122 kb on - strand, within ABZR87_RS15060at 3178.196 kb on + strand, within ABZR87_RS15060at 3178.196 kb on + strand, within ABZR87_RS15060at 3178.196 kb on + strand, within ABZR87_RS15060at 3178.196 kb on + strand, within ABZR87_RS15060at 3178.196 kb on + strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.197 kb on - strand, within ABZR87_RS15060at 3178.283 kb on + strand, within ABZR87_RS15060at 3178.283 kb on + strand, within ABZR87_RS15060at 3178.283 kb on + strand, within ABZR87_RS15060at 3178.283 kb on + strand, within ABZR87_RS15060at 3178.284 kb on - strand, within ABZR87_RS15060at 3178.284 kb on - strand, within ABZR87_RS15060at 3178.295 kb on + strand, within ABZR87_RS15060at 3178.295 kb on + strand, within ABZR87_RS15060at 3178.332 kb on - strand, within ABZR87_RS15060at 3178.332 kb on - strand, within ABZR87_RS15060at 3178.439 kb on + strand, within ABZR87_RS15060at 3178.464 kb on - strand, within ABZR87_RS15060at 3178.477 kb on + strand, within ABZR87_RS15060at 3178.478 kb on - strand, within ABZR87_RS15060at 3178.478 kb on - strand, within ABZR87_RS15060

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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3,175,570 + ABZR87_RS15050 0.15 +1.4
3,175,571 - ABZR87_RS15050 0.15 +0.4
3,175,677 + ABZR87_RS15050 0.25 +1.6
3,175,677 + ABZR87_RS15050 0.25 -0.1
3,176,119 + ABZR87_RS15050 0.68 +0.1
3,176,119 + ABZR87_RS15050 0.68 +0.6
3,176,119 + ABZR87_RS15050 0.68 -1.3
3,176,120 - ABZR87_RS15050 0.68 -2.7
3,176,120 - ABZR87_RS15050 0.68 -1.2
3,176,120 - ABZR87_RS15050 0.68 +1.9
3,176,120 - ABZR87_RS15050 0.68 +1.4
3,176,120 - ABZR87_RS15050 0.68 +0.6
3,176,120 - ABZR87_RS15050 0.68 -3.3
3,176,120 - ABZR87_RS15050 0.68 -1.3
3,176,120 - ABZR87_RS15050 0.68 -1.5
3,176,197 + ABZR87_RS15050 0.75 +1.3
3,176,198 - ABZR87_RS15050 0.75 -2.9
3,176,198 - ABZR87_RS15050 0.75 -2.0
3,176,198 - ABZR87_RS15050 0.75 -3.4
3,176,271 + ABZR87_RS15050 0.83 +1.7
3,176,271 + ABZR87_RS15050 0.83 -2.3
3,176,575 + ABZR87_RS15055 0.12 -0.1
3,176,576 - ABZR87_RS15055 0.12 -1.7
3,176,576 - ABZR87_RS15055 0.12 -2.0
3,176,587 - ABZR87_RS15055 0.13 -1.9
3,176,606 - ABZR87_RS15055 0.15 -2.7
3,176,606 - ABZR87_RS15055 0.15 -0.7
3,176,606 - ABZR87_RS15055 0.15 -0.7
3,176,652 + ABZR87_RS15055 0.19 -1.3
3,176,652 + ABZR87_RS15055 0.19 -1.9
3,176,655 + ABZR87_RS15055 0.19 -1.3
3,176,655 + ABZR87_RS15055 0.19 +0.7
3,176,655 + ABZR87_RS15055 0.19 -1.9
3,176,655 + ABZR87_RS15055 0.19 +1.2
3,176,656 - ABZR87_RS15055 0.19 +1.7
3,176,656 - ABZR87_RS15055 0.19 -1.8
3,176,695 - ABZR87_RS15055 0.23 -0.8
3,176,712 + ABZR87_RS15055 0.25 -1.8
3,176,713 - ABZR87_RS15055 0.25 -0.0
3,176,884 + ABZR87_RS15055 0.41 -0.0
3,176,885 - ABZR87_RS15055 0.42 -2.9
3,176,937 + ABZR87_RS15055 0.47 -0.9
3,176,937 + ABZR87_RS15055 0.47 +0.9
3,176,937 + ABZR87_RS15055 0.47 -1.9
3,176,938 - ABZR87_RS15055 0.47 -2.6
3,176,939 + ABZR87_RS15055 0.47 -2.4
3,176,940 - ABZR87_RS15055 0.47 -0.1
3,177,022 + ABZR87_RS15055 0.55 +0.4
3,177,090 + ABZR87_RS15055 0.61 -3.3
3,177,090 + ABZR87_RS15055 0.61 -2.1
3,177,121 + ABZR87_RS15055 0.64 -2.6
3,177,122 - ABZR87_RS15055 0.64 -1.3
3,177,330 + ABZR87_RS15055 0.84 +0.1
3,177,330 + ABZR87_RS15055 0.84 -3.6
3,177,489 + -0.2
3,177,587 + +0.0
3,177,606 - +0.9
3,177,611 + +1.4
3,177,611 + +0.1
3,177,612 - +0.7
3,177,668 + ABZR87_RS15060 0.12 +0.0
3,177,716 + ABZR87_RS15060 0.16 -0.9
3,177,716 + ABZR87_RS15060 0.16 +0.3
3,177,757 + ABZR87_RS15060 0.19 +0.3
3,177,757 + ABZR87_RS15060 0.19 +2.5
3,177,757 + ABZR87_RS15060 0.19 +0.8
3,177,757 + ABZR87_RS15060 0.19 +2.9
3,177,758 - ABZR87_RS15060 0.19 -1.1
3,177,758 - ABZR87_RS15060 0.19 -1.9
3,177,758 - ABZR87_RS15060 0.19 +0.1
3,177,758 - ABZR87_RS15060 0.19 -3.5
3,177,758 - ABZR87_RS15060 0.19 -1.4
3,177,824 + ABZR87_RS15060 0.24 -2.4
3,177,825 - ABZR87_RS15060 0.24 -2.8
3,177,825 - ABZR87_RS15060 0.24 +0.8
3,177,825 - ABZR87_RS15060 0.24 +1.7
3,177,863 + ABZR87_RS15060 0.27 +0.8
3,177,864 - ABZR87_RS15060 0.27 +1.1
3,178,040 + ABZR87_RS15060 0.40 -0.9
3,178,041 - ABZR87_RS15060 0.40 +0.1
3,178,041 - ABZR87_RS15060 0.40 +2.3
3,178,041 - ABZR87_RS15060 0.40 -2.2
3,178,122 - ABZR87_RS15060 0.46 +0.9
3,178,196 + ABZR87_RS15060 0.51 +0.3
3,178,196 + ABZR87_RS15060 0.51 +2.5
3,178,196 + ABZR87_RS15060 0.51 -0.7
3,178,196 + ABZR87_RS15060 0.51 -1.1
3,178,196 + ABZR87_RS15060 0.51 +2.5
3,178,197 - ABZR87_RS15060 0.52 +0.3
3,178,197 - ABZR87_RS15060 0.52 -1.1
3,178,197 - ABZR87_RS15060 0.52 -1.7
3,178,197 - ABZR87_RS15060 0.52 +0.8
3,178,197 - ABZR87_RS15060 0.52 +0.3
3,178,197 - ABZR87_RS15060 0.52 -1.3
3,178,283 + ABZR87_RS15060 0.58 -1.9
3,178,283 + ABZR87_RS15060 0.58 -1.8
3,178,283 + ABZR87_RS15060 0.58 -1.3
3,178,283 + ABZR87_RS15060 0.58 -0.5
3,178,284 - ABZR87_RS15060 0.58 +0.3
3,178,284 - ABZR87_RS15060 0.58 +1.7
3,178,295 + ABZR87_RS15060 0.59 +2.5
3,178,295 + ABZR87_RS15060 0.59 +1.4
3,178,332 - ABZR87_RS15060 0.62 +1.1
3,178,332 - ABZR87_RS15060 0.62 -1.4
3,178,439 + ABZR87_RS15060 0.70 +0.8
3,178,464 - ABZR87_RS15060 0.72 +1.1
3,178,477 + ABZR87_RS15060 0.73 +1.7
3,178,478 - ABZR87_RS15060 0.73 +0.0
3,178,478 - ABZR87_RS15060 0.73 +2.0

Or see this region's nucleotide sequence