Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14395 and ABZR87_RS14400 are separated by 516 nucleotides ABZR87_RS14400 and ABZR87_RS14405 are separated by 48 nucleotides ABZR87_RS14405 and ABZR87_RS14410 are separated by 9 nucleotides
ABZR87_RS14395: ABZR87_RS14395 - ATP-binding protein, at 3,043,935 to 3,046,256
_RS14395
ABZR87_RS14400: ABZR87_RS14400 - energy transducer TonB, at 3,046,773 to 3,047,429
_RS14400
ABZR87_RS14405: ABZR87_RS14405 - MotA/TolQ/ExbB proton channel family protein, at 3,047,478 to 3,048,206
_RS14405
ABZR87_RS14410: ABZR87_RS14410 - biopolymer transporter ExbD, at 3,048,216 to 3,048,626
_RS14410
Position (kb)
3046
3047
3048 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.878 kb on - strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.890 kb on - strand, within ABZR87_RS14395 at 3045.890 kb on - strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3046.085 kb on + strand at 3046.086 kb on - strand at 3046.170 kb on + strand at 3046.324 kb on - strand at 3046.346 kb on - strand at 3046.376 kb on - strand at 3046.525 kb on - strand at 3046.578 kb on + strand at 3046.578 kb on + strand at 3046.578 kb on + strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.448 kb on + strand at 3048.204 kb on + strand at 3048.204 kb on + strand at 3048.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 3,045,877 + ABZR87_RS14395 0.84 +0.5 3,045,877 + ABZR87_RS14395 0.84 +4.4 3,045,877 + ABZR87_RS14395 0.84 +1.2 3,045,878 - ABZR87_RS14395 0.84 -1.2 3,045,889 + ABZR87_RS14395 0.84 +2.1 3,045,889 + ABZR87_RS14395 0.84 -0.0 3,045,889 + ABZR87_RS14395 0.84 -3.9 3,045,889 + ABZR87_RS14395 0.84 +1.5 3,045,889 + ABZR87_RS14395 0.84 -0.6 3,045,890 - ABZR87_RS14395 0.84 -0.3 3,045,890 - ABZR87_RS14395 0.84 +0.4 3,045,892 + ABZR87_RS14395 0.84 +0.4 3,045,892 + ABZR87_RS14395 0.84 +1.7 3,045,892 + ABZR87_RS14395 0.84 -2.0 3,045,892 + ABZR87_RS14395 0.84 +0.4 3,045,892 + ABZR87_RS14395 0.84 +1.6 3,045,893 - ABZR87_RS14395 0.84 +0.4 3,045,893 - ABZR87_RS14395 0.84 -4.1 3,045,893 - ABZR87_RS14395 0.84 -1.6 3,045,893 - ABZR87_RS14395 0.84 +1.2 3,045,893 - ABZR87_RS14395 0.84 +2.2 3,045,893 - ABZR87_RS14395 0.84 -1.8 3,045,950 + ABZR87_RS14395 0.87 -2.9 3,045,950 + ABZR87_RS14395 0.87 +0.2 3,045,950 + ABZR87_RS14395 0.87 +1.5 3,045,950 + ABZR87_RS14395 0.87 -1.0 3,045,950 + ABZR87_RS14395 0.87 +0.2 3,045,950 + ABZR87_RS14395 0.87 +0.6 3,045,951 - ABZR87_RS14395 0.87 -2.7 3,045,951 - ABZR87_RS14395 0.87 +0.6 3,045,951 - ABZR87_RS14395 0.87 +0.1 3,045,951 - ABZR87_RS14395 0.87 +0.6 3,046,085 + +1.7 3,046,086 - +0.4 3,046,170 + -1.2 3,046,324 - +0.6 3,046,346 - -0.8 3,046,376 - -1.0 3,046,525 - +0.1 3,046,578 + -0.7 3,046,578 + +1.2 3,046,578 + -0.7 3,046,579 - -3.3 3,046,579 - -1.4 3,046,579 - -0.9 3,046,579 - +2.2 3,046,583 + -0.7 3,046,583 + +1.2 3,046,583 + -2.5 3,046,583 + -1.6 3,046,583 + +1.7 3,046,583 + +0.7 3,046,583 + +1.5 3,046,583 + -3.1 3,046,583 + -2.1 3,047,427 + +0.7 3,047,427 + -0.5 3,047,427 + -0.4 3,047,427 + +1.4 3,047,427 + +1.1 3,047,427 + +1.2 3,047,427 + -1.9 3,047,448 + -2.4 3,048,204 + -0.1 3,048,204 + -0.9 3,048,204 + +2.1
Or see this region's nucleotide sequence