Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13510

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13500 and ABZR87_RS13505 are separated by 6 nucleotidesABZR87_RS13505 and ABZR87_RS13510 are separated by 39 nucleotidesABZR87_RS13510 and ABZR87_RS13515 are separated by 3 nucleotidesABZR87_RS13515 and ABZR87_RS13520 are separated by 10 nucleotides ABZR87_RS13500: ABZR87_RS13500 - homoprotocatechuate degradation operon regulator HpaR, at 2,863,017 to 2,863,481 _RS13500 ABZR87_RS13505: ABZR87_RS13505 - 4-hydroxy-2-oxoheptanedioate aldolase, at 2,863,488 to 2,864,294 _RS13505 ABZR87_RS13510: ABZR87_RS13510 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 2,864,334 to 2,865,137 _RS13510 ABZR87_RS13515: ABZR87_RS13515 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 2,865,141 to 2,865,530 _RS13515 ABZR87_RS13520: ABZR87_RS13520 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,865,541 to 2,866,410 _RS13520 Position (kb) 2864 2865 2866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2863.360 kb on - strand, within ABZR87_RS13500at 2863.360 kb on - strand, within ABZR87_RS13500at 2863.360 kb on - strand, within ABZR87_RS13500at 2863.480 kb on - strandat 2863.492 kb on + strandat 2863.492 kb on + strandat 2863.493 kb on - strandat 2863.493 kb on - strandat 2863.493 kb on - strandat 2863.621 kb on + strand, within ABZR87_RS13505at 2863.621 kb on + strand, within ABZR87_RS13505at 2863.621 kb on + strand, within ABZR87_RS13505at 2863.621 kb on + strand, within ABZR87_RS13505at 2863.621 kb on + strand, within ABZR87_RS13505at 2863.622 kb on - strand, within ABZR87_RS13505at 2863.622 kb on - strand, within ABZR87_RS13505at 2863.850 kb on + strand, within ABZR87_RS13505at 2863.850 kb on + strand, within ABZR87_RS13505at 2863.850 kb on + strand, within ABZR87_RS13505at 2863.851 kb on - strand, within ABZR87_RS13505at 2863.851 kb on - strand, within ABZR87_RS13505at 2863.851 kb on - strand, within ABZR87_RS13505at 2863.885 kb on + strand, within ABZR87_RS13505at 2863.885 kb on + strand, within ABZR87_RS13505at 2863.885 kb on + strand, within ABZR87_RS13505at 2863.885 kb on + strand, within ABZR87_RS13505at 2863.886 kb on - strand, within ABZR87_RS13505at 2863.886 kb on - strand, within ABZR87_RS13505at 2863.886 kb on - strand, within ABZR87_RS13505at 2864.033 kb on + strand, within ABZR87_RS13505at 2864.098 kb on + strand, within ABZR87_RS13505at 2864.318 kb on - strandat 2864.318 kb on - strandat 2864.336 kb on - strandat 2864.371 kb on + strandat 2864.371 kb on + strandat 2864.387 kb on + strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.388 kb on - strandat 2864.436 kb on + strand, within ABZR87_RS13510at 2864.437 kb on - strand, within ABZR87_RS13510at 2864.437 kb on - strand, within ABZR87_RS13510at 2864.437 kb on - strand, within ABZR87_RS13510at 2864.756 kb on - strand, within ABZR87_RS13510at 2864.899 kb on + strand, within ABZR87_RS13510at 2864.900 kb on - strand, within ABZR87_RS13510at 2865.181 kb on + strand, within ABZR87_RS13515at 2865.181 kb on + strand, within ABZR87_RS13515at 2865.181 kb on + strand, within ABZR87_RS13515at 2865.182 kb on - strand, within ABZR87_RS13515at 2865.182 kb on - strand, within ABZR87_RS13515at 2865.229 kb on + strand, within ABZR87_RS13515at 2865.509 kb on - strandat 2865.509 kb on - strandat 2865.509 kb on - strandat 2865.644 kb on + strand, within ABZR87_RS13520at 2865.645 kb on - strand, within ABZR87_RS13520at 2865.645 kb on - strand, within ABZR87_RS13520at 2865.645 kb on - strand, within ABZR87_RS13520at 2865.645 kb on - strand, within ABZR87_RS13520at 2865.719 kb on + strand, within ABZR87_RS13520at 2865.767 kb on - strand, within ABZR87_RS13520at 2865.767 kb on - strand, within ABZR87_RS13520at 2865.767 kb on - strand, within ABZR87_RS13520at 2865.767 kb on - strand, within ABZR87_RS13520at 2866.013 kb on + strand, within ABZR87_RS13520at 2866.013 kb on + strand, within ABZR87_RS13520at 2866.013 kb on + strand, within ABZR87_RS13520at 2866.014 kb on - strand, within ABZR87_RS13520

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,863,360 - ABZR87_RS13500 0.74 +3.0
2,863,360 - ABZR87_RS13500 0.74 +1.8
2,863,360 - ABZR87_RS13500 0.74 +2.7
2,863,480 - -1.2
2,863,492 + -3.2
2,863,492 + +0.3
2,863,493 - -0.6
2,863,493 - +1.6
2,863,493 - +0.8
2,863,621 + ABZR87_RS13505 0.16 -0.4
2,863,621 + ABZR87_RS13505 0.16 +0.0
2,863,621 + ABZR87_RS13505 0.16 -1.4
2,863,621 + ABZR87_RS13505 0.16 +0.6
2,863,621 + ABZR87_RS13505 0.16 -0.4
2,863,622 - ABZR87_RS13505 0.17 -3.0
2,863,622 - ABZR87_RS13505 0.17 -0.0
2,863,850 + ABZR87_RS13505 0.45 -2.5
2,863,850 + ABZR87_RS13505 0.45 +1.9
2,863,850 + ABZR87_RS13505 0.45 -1.4
2,863,851 - ABZR87_RS13505 0.45 +1.7
2,863,851 - ABZR87_RS13505 0.45 +2.4
2,863,851 - ABZR87_RS13505 0.45 -1.4
2,863,885 + ABZR87_RS13505 0.49 -4.2
2,863,885 + ABZR87_RS13505 0.49 +1.6
2,863,885 + ABZR87_RS13505 0.49 +0.4
2,863,885 + ABZR87_RS13505 0.49 +0.0
2,863,886 - ABZR87_RS13505 0.49 -1.4
2,863,886 - ABZR87_RS13505 0.49 +2.1
2,863,886 - ABZR87_RS13505 0.49 +0.6
2,864,033 + ABZR87_RS13505 0.68 -3.1
2,864,098 + ABZR87_RS13505 0.76 +0.0
2,864,318 - -2.1
2,864,318 - -0.2
2,864,336 - -0.2
2,864,371 + -1.4
2,864,371 + -1.2
2,864,387 + -1.0
2,864,388 - +0.9
2,864,388 - +2.5
2,864,388 - +0.2
2,864,388 - -1.0
2,864,388 - +1.6
2,864,388 - +0.0
2,864,388 - -0.3
2,864,436 + ABZR87_RS13510 0.13 -2.7
2,864,437 - ABZR87_RS13510 0.13 +1.5
2,864,437 - ABZR87_RS13510 0.13 -2.5
2,864,437 - ABZR87_RS13510 0.13 +0.6
2,864,756 - ABZR87_RS13510 0.52 -0.4
2,864,899 + ABZR87_RS13510 0.70 -0.2
2,864,900 - ABZR87_RS13510 0.70 +0.2
2,865,181 + ABZR87_RS13515 0.10 +0.4
2,865,181 + ABZR87_RS13515 0.10 -3.5
2,865,181 + ABZR87_RS13515 0.10 +0.4
2,865,182 - ABZR87_RS13515 0.11 -2.1
2,865,182 - ABZR87_RS13515 0.11 +2.5
2,865,229 + ABZR87_RS13515 0.23 +0.7
2,865,509 - -3.6
2,865,509 - +1.8
2,865,509 - +0.8
2,865,644 + ABZR87_RS13520 0.12 -2.3
2,865,645 - ABZR87_RS13520 0.12 -0.9
2,865,645 - ABZR87_RS13520 0.12 +2.1
2,865,645 - ABZR87_RS13520 0.12 -3.1
2,865,645 - ABZR87_RS13520 0.12 -0.3
2,865,719 + ABZR87_RS13520 0.20 +0.4
2,865,767 - ABZR87_RS13520 0.26 +0.2
2,865,767 - ABZR87_RS13520 0.26 -0.1
2,865,767 - ABZR87_RS13520 0.26 -0.4
2,865,767 - ABZR87_RS13520 0.26 -1.7
2,866,013 + ABZR87_RS13520 0.54 +1.5
2,866,013 + ABZR87_RS13520 0.54 -0.0
2,866,013 + ABZR87_RS13520 0.54 -0.2
2,866,014 - ABZR87_RS13520 0.54 -0.3

Or see this region's nucleotide sequence