Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13500 and ABZR87_RS13505 are separated by 6 nucleotides ABZR87_RS13505 and ABZR87_RS13510 are separated by 39 nucleotides ABZR87_RS13510 and ABZR87_RS13515 are separated by 3 nucleotides ABZR87_RS13515 and ABZR87_RS13520 are separated by 10 nucleotides
ABZR87_RS13500: ABZR87_RS13500 - homoprotocatechuate degradation operon regulator HpaR, at 2,863,017 to 2,863,481
_RS13500
ABZR87_RS13505: ABZR87_RS13505 - 4-hydroxy-2-oxoheptanedioate aldolase, at 2,863,488 to 2,864,294
_RS13505
ABZR87_RS13510: ABZR87_RS13510 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 2,864,334 to 2,865,137
_RS13510
ABZR87_RS13515: ABZR87_RS13515 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 2,865,141 to 2,865,530
_RS13515
ABZR87_RS13520: ABZR87_RS13520 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,865,541 to 2,866,410
_RS13520
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2863.360 kb on - strand, within ABZR87_RS13500 at 2863.360 kb on - strand, within ABZR87_RS13500 at 2863.360 kb on - strand, within ABZR87_RS13500 at 2863.480 kb on - strand at 2863.492 kb on + strand at 2863.492 kb on + strand at 2863.493 kb on - strand at 2863.493 kb on - strand at 2863.493 kb on - strand at 2863.621 kb on + strand, within ABZR87_RS13505 at 2863.621 kb on + strand, within ABZR87_RS13505 at 2863.621 kb on + strand, within ABZR87_RS13505 at 2863.621 kb on + strand, within ABZR87_RS13505 at 2863.621 kb on + strand, within ABZR87_RS13505 at 2863.622 kb on - strand, within ABZR87_RS13505 at 2863.622 kb on - strand, within ABZR87_RS13505 at 2863.850 kb on + strand, within ABZR87_RS13505 at 2863.850 kb on + strand, within ABZR87_RS13505 at 2863.850 kb on + strand, within ABZR87_RS13505 at 2863.851 kb on - strand, within ABZR87_RS13505 at 2863.851 kb on - strand, within ABZR87_RS13505 at 2863.851 kb on - strand, within ABZR87_RS13505 at 2863.885 kb on + strand, within ABZR87_RS13505 at 2863.885 kb on + strand, within ABZR87_RS13505 at 2863.885 kb on + strand, within ABZR87_RS13505 at 2863.885 kb on + strand, within ABZR87_RS13505 at 2863.886 kb on - strand, within ABZR87_RS13505 at 2863.886 kb on - strand, within ABZR87_RS13505 at 2863.886 kb on - strand, within ABZR87_RS13505 at 2864.033 kb on + strand, within ABZR87_RS13505 at 2864.098 kb on + strand, within ABZR87_RS13505 at 2864.318 kb on - strand at 2864.318 kb on - strand at 2864.336 kb on - strand at 2864.371 kb on + strand at 2864.371 kb on + strand at 2864.387 kb on + strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.388 kb on - strand at 2864.436 kb on + strand, within ABZR87_RS13510 at 2864.437 kb on - strand, within ABZR87_RS13510 at 2864.437 kb on - strand, within ABZR87_RS13510 at 2864.437 kb on - strand, within ABZR87_RS13510 at 2864.756 kb on - strand, within ABZR87_RS13510 at 2864.899 kb on + strand, within ABZR87_RS13510 at 2864.900 kb on - strand, within ABZR87_RS13510 at 2865.181 kb on + strand, within ABZR87_RS13515 at 2865.181 kb on + strand, within ABZR87_RS13515 at 2865.181 kb on + strand, within ABZR87_RS13515 at 2865.182 kb on - strand, within ABZR87_RS13515 at 2865.182 kb on - strand, within ABZR87_RS13515 at 2865.229 kb on + strand, within ABZR87_RS13515 at 2865.509 kb on - strand at 2865.509 kb on - strand at 2865.509 kb on - strand at 2865.644 kb on + strand, within ABZR87_RS13520 at 2865.645 kb on - strand, within ABZR87_RS13520 at 2865.645 kb on - strand, within ABZR87_RS13520 at 2865.645 kb on - strand, within ABZR87_RS13520 at 2865.645 kb on - strand, within ABZR87_RS13520 at 2865.719 kb on + strand, within ABZR87_RS13520 at 2865.767 kb on - strand, within ABZR87_RS13520 at 2865.767 kb on - strand, within ABZR87_RS13520 at 2865.767 kb on - strand, within ABZR87_RS13520 at 2865.767 kb on - strand, within ABZR87_RS13520 at 2866.013 kb on + strand, within ABZR87_RS13520 at 2866.013 kb on + strand, within ABZR87_RS13520 at 2866.013 kb on + strand, within ABZR87_RS13520 at 2866.014 kb on - strand, within ABZR87_RS13520
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,863,360 - ABZR87_RS13500 0.74 +3.0 2,863,360 - ABZR87_RS13500 0.74 +1.8 2,863,360 - ABZR87_RS13500 0.74 +2.7 2,863,480 - -1.2 2,863,492 + -3.2 2,863,492 + +0.3 2,863,493 - -0.6 2,863,493 - +1.6 2,863,493 - +0.8 2,863,621 + ABZR87_RS13505 0.16 -0.4 2,863,621 + ABZR87_RS13505 0.16 +0.0 2,863,621 + ABZR87_RS13505 0.16 -1.4 2,863,621 + ABZR87_RS13505 0.16 +0.6 2,863,621 + ABZR87_RS13505 0.16 -0.4 2,863,622 - ABZR87_RS13505 0.17 -3.0 2,863,622 - ABZR87_RS13505 0.17 -0.0 2,863,850 + ABZR87_RS13505 0.45 -2.5 2,863,850 + ABZR87_RS13505 0.45 +1.9 2,863,850 + ABZR87_RS13505 0.45 -1.4 2,863,851 - ABZR87_RS13505 0.45 +1.7 2,863,851 - ABZR87_RS13505 0.45 +2.4 2,863,851 - ABZR87_RS13505 0.45 -1.4 2,863,885 + ABZR87_RS13505 0.49 -4.2 2,863,885 + ABZR87_RS13505 0.49 +1.6 2,863,885 + ABZR87_RS13505 0.49 +0.4 2,863,885 + ABZR87_RS13505 0.49 +0.0 2,863,886 - ABZR87_RS13505 0.49 -1.4 2,863,886 - ABZR87_RS13505 0.49 +2.1 2,863,886 - ABZR87_RS13505 0.49 +0.6 2,864,033 + ABZR87_RS13505 0.68 -3.1 2,864,098 + ABZR87_RS13505 0.76 +0.0 2,864,318 - -2.1 2,864,318 - -0.2 2,864,336 - -0.2 2,864,371 + -1.4 2,864,371 + -1.2 2,864,387 + -1.0 2,864,388 - +0.9 2,864,388 - +2.5 2,864,388 - +0.2 2,864,388 - -1.0 2,864,388 - +1.6 2,864,388 - +0.0 2,864,388 - -0.3 2,864,436 + ABZR87_RS13510 0.13 -2.7 2,864,437 - ABZR87_RS13510 0.13 +1.5 2,864,437 - ABZR87_RS13510 0.13 -2.5 2,864,437 - ABZR87_RS13510 0.13 +0.6 2,864,756 - ABZR87_RS13510 0.52 -0.4 2,864,899 + ABZR87_RS13510 0.70 -0.2 2,864,900 - ABZR87_RS13510 0.70 +0.2 2,865,181 + ABZR87_RS13515 0.10 +0.4 2,865,181 + ABZR87_RS13515 0.10 -3.5 2,865,181 + ABZR87_RS13515 0.10 +0.4 2,865,182 - ABZR87_RS13515 0.11 -2.1 2,865,182 - ABZR87_RS13515 0.11 +2.5 2,865,229 + ABZR87_RS13515 0.23 +0.7 2,865,509 - -3.6 2,865,509 - +1.8 2,865,509 - +0.8 2,865,644 + ABZR87_RS13520 0.12 -2.3 2,865,645 - ABZR87_RS13520 0.12 -0.9 2,865,645 - ABZR87_RS13520 0.12 +2.1 2,865,645 - ABZR87_RS13520 0.12 -3.1 2,865,645 - ABZR87_RS13520 0.12 -0.3 2,865,719 + ABZR87_RS13520 0.20 +0.4 2,865,767 - ABZR87_RS13520 0.26 +0.2 2,865,767 - ABZR87_RS13520 0.26 -0.1 2,865,767 - ABZR87_RS13520 0.26 -0.4 2,865,767 - ABZR87_RS13520 0.26 -1.7 2,866,013 + ABZR87_RS13520 0.54 +1.5 2,866,013 + ABZR87_RS13520 0.54 -0.0 2,866,013 + ABZR87_RS13520 0.54 -0.2 2,866,014 - ABZR87_RS13520 0.54 -0.3
Or see this region's nucleotide sequence