Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12040

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12035 and ABZR87_RS12040 are separated by 141 nucleotidesABZR87_RS12040 and ABZR87_RS12045 are separated by 40 nucleotidesABZR87_RS12045 and ABZR87_RS12050 are separated by 34 nucleotides ABZR87_RS12035: ABZR87_RS12035 - ABC transporter substrate-binding protein, at 2,555,532 to 2,556,479 _RS12035 ABZR87_RS12040: ABZR87_RS12040 - SDR family oxidoreductase, at 2,556,621 to 2,557,370 _RS12040 ABZR87_RS12045: ABZR87_RS12045 - ureidoglycolate lyase, at 2,557,411 to 2,558,271 _RS12045 ABZR87_RS12050: ABZR87_RS12050 - L-fuconate dehydratase, at 2,558,306 to 2,559,583 _RS12050 Position (kb) 2556 2557 2558Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2555.646 kb on + strand, within ABZR87_RS12035at 2555.646 kb on + strand, within ABZR87_RS12035at 2555.701 kb on - strand, within ABZR87_RS12035at 2555.908 kb on - strand, within ABZR87_RS12035at 2555.908 kb on - strand, within ABZR87_RS12035at 2555.908 kb on - strand, within ABZR87_RS12035at 2555.911 kb on - strand, within ABZR87_RS12035at 2555.911 kb on - strand, within ABZR87_RS12035at 2556.012 kb on + strand, within ABZR87_RS12035at 2556.013 kb on - strand, within ABZR87_RS12035at 2556.063 kb on + strand, within ABZR87_RS12035at 2556.064 kb on - strand, within ABZR87_RS12035at 2556.106 kb on - strand, within ABZR87_RS12035at 2556.351 kb on + strand, within ABZR87_RS12035at 2556.351 kb on + strand, within ABZR87_RS12035at 2556.352 kb on - strand, within ABZR87_RS12035at 2556.352 kb on - strand, within ABZR87_RS12035at 2556.352 kb on - strand, within ABZR87_RS12035at 2556.352 kb on - strand, within ABZR87_RS12035at 2556.474 kb on + strandat 2556.475 kb on - strandat 2556.668 kb on + strandat 2556.749 kb on + strand, within ABZR87_RS12040at 2556.750 kb on - strand, within ABZR87_RS12040at 2556.953 kb on + strand, within ABZR87_RS12040at 2556.953 kb on + strand, within ABZR87_RS12040at 2556.954 kb on - strand, within ABZR87_RS12040at 2557.057 kb on - strand, within ABZR87_RS12040at 2557.057 kb on - strand, within ABZR87_RS12040at 2557.427 kb on - strandat 2557.660 kb on + strand, within ABZR87_RS12045at 2557.660 kb on + strand, within ABZR87_RS12045at 2557.661 kb on - strand, within ABZR87_RS12045at 2557.661 kb on - strand, within ABZR87_RS12045at 2557.661 kb on - strand, within ABZR87_RS12045at 2557.831 kb on + strand, within ABZR87_RS12045at 2557.904 kb on - strand, within ABZR87_RS12045at 2558.098 kb on + strand, within ABZR87_RS12045at 2558.098 kb on + strand, within ABZR87_RS12045at 2558.099 kb on - strand, within ABZR87_RS12045

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,555,646 + ABZR87_RS12035 0.12 -0.7
2,555,646 + ABZR87_RS12035 0.12 -0.7
2,555,701 - ABZR87_RS12035 0.18 -1.5
2,555,908 - ABZR87_RS12035 0.40 +1.1
2,555,908 - ABZR87_RS12035 0.40 -0.8
2,555,908 - ABZR87_RS12035 0.40 +0.8
2,555,911 - ABZR87_RS12035 0.40 -2.4
2,555,911 - ABZR87_RS12035 0.40 -0.6
2,556,012 + ABZR87_RS12035 0.51 +0.5
2,556,013 - ABZR87_RS12035 0.51 +0.2
2,556,063 + ABZR87_RS12035 0.56 -0.0
2,556,064 - ABZR87_RS12035 0.56 +1.8
2,556,106 - ABZR87_RS12035 0.61 -1.6
2,556,351 + ABZR87_RS12035 0.86 +3.2
2,556,351 + ABZR87_RS12035 0.86 +1.6
2,556,352 - ABZR87_RS12035 0.86 -2.3
2,556,352 - ABZR87_RS12035 0.86 +1.7
2,556,352 - ABZR87_RS12035 0.86 +0.7
2,556,352 - ABZR87_RS12035 0.86 +0.1
2,556,474 + -1.2
2,556,475 - -0.1
2,556,668 + -2.8
2,556,749 + ABZR87_RS12040 0.17 -1.4
2,556,750 - ABZR87_RS12040 0.17 -3.0
2,556,953 + ABZR87_RS12040 0.44 -0.4
2,556,953 + ABZR87_RS12040 0.44 -1.6
2,556,954 - ABZR87_RS12040 0.44 +2.5
2,557,057 - ABZR87_RS12040 0.58 +0.5
2,557,057 - ABZR87_RS12040 0.58 -0.1
2,557,427 - +1.8
2,557,660 + ABZR87_RS12045 0.29 +1.0
2,557,660 + ABZR87_RS12045 0.29 -0.3
2,557,661 - ABZR87_RS12045 0.29 +0.9
2,557,661 - ABZR87_RS12045 0.29 -1.8
2,557,661 - ABZR87_RS12045 0.29 +0.1
2,557,831 + ABZR87_RS12045 0.49 -1.8
2,557,904 - ABZR87_RS12045 0.57 +1.3
2,558,098 + ABZR87_RS12045 0.80 -2.5
2,558,098 + ABZR87_RS12045 0.80 -0.7
2,558,099 - ABZR87_RS12045 0.80 -2.8

Or see this region's nucleotide sequence