Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11685

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11675 and ABZR87_RS11680 are separated by 16 nucleotidesABZR87_RS11680 and ABZR87_RS11685 overlap by 18 nucleotidesABZR87_RS11685 and ABZR87_RS11690 are separated by 31 nucleotides ABZR87_RS11675: ABZR87_RS11675 - disulfide bond formation protein B, at 2,474,634 to 2,475,113 _RS11675 ABZR87_RS11680: ABZR87_RS11680 - DUF523 domain-containing protein, at 2,475,130 to 2,475,657 _RS11680 ABZR87_RS11685: ABZR87_RS11685 - CaiB/BaiF CoA-transferase family protein, at 2,475,640 to 2,476,746 _RS11685 ABZR87_RS11690: ABZR87_RS11690 - ATP-binding cassette domain-containing protein, at 2,476,778 to 2,478,715 _RS11690 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2474.707 kb on - strand, within ABZR87_RS11675at 2474.884 kb on + strand, within ABZR87_RS11675at 2474.884 kb on + strand, within ABZR87_RS11675at 2474.885 kb on - strand, within ABZR87_RS11675at 2474.885 kb on - strand, within ABZR87_RS11675at 2475.990 kb on - strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.112 kb on - strand, within ABZR87_RS11685at 2476.112 kb on - strand, within ABZR87_RS11685at 2476.280 kb on + strand, within ABZR87_RS11685at 2476.280 kb on + strand, within ABZR87_RS11685at 2476.280 kb on + strand, within ABZR87_RS11685at 2476.281 kb on - strand, within ABZR87_RS11685at 2476.287 kb on + strand, within ABZR87_RS11685at 2476.288 kb on - strand, within ABZR87_RS11685at 2476.589 kb on + strand, within ABZR87_RS11685at 2476.589 kb on + strand, within ABZR87_RS11685at 2476.903 kb on - strandat 2477.563 kb on - strand, within ABZR87_RS11690

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,474,707 - ABZR87_RS11675 0.15 +0.7
2,474,884 + ABZR87_RS11675 0.52 +1.7
2,474,884 + ABZR87_RS11675 0.52 -1.4
2,474,885 - ABZR87_RS11675 0.52 -0.7
2,474,885 - ABZR87_RS11675 0.52 -2.2
2,475,990 - ABZR87_RS11685 0.32 -0.0
2,475,991 + ABZR87_RS11685 0.32 +0.6
2,475,991 + ABZR87_RS11685 0.32 +1.0
2,475,991 + ABZR87_RS11685 0.32 -1.7
2,475,992 - ABZR87_RS11685 0.32 -0.3
2,475,992 - ABZR87_RS11685 0.32 -1.7
2,475,992 - ABZR87_RS11685 0.32 +1.0
2,476,111 + ABZR87_RS11685 0.43 -2.7
2,476,111 + ABZR87_RS11685 0.43 +3.1
2,476,111 + ABZR87_RS11685 0.43 -0.2
2,476,112 - ABZR87_RS11685 0.43 -2.3
2,476,112 - ABZR87_RS11685 0.43 -3.3
2,476,280 + ABZR87_RS11685 0.58 +2.1
2,476,280 + ABZR87_RS11685 0.58 -0.1
2,476,280 + ABZR87_RS11685 0.58 +2.3
2,476,281 - ABZR87_RS11685 0.58 -1.2
2,476,287 + ABZR87_RS11685 0.58 -1.8
2,476,288 - ABZR87_RS11685 0.59 +1.6
2,476,589 + ABZR87_RS11685 0.86 +2.1
2,476,589 + ABZR87_RS11685 0.86 +0.3
2,476,903 - +2.1
2,477,563 - ABZR87_RS11690 0.41 -1.5

Or see this region's nucleotide sequence