Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11050

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11040 and ABZR87_RS11045 are separated by 21 nucleotidesABZR87_RS11045 and ABZR87_RS11050 are separated by 11 nucleotidesABZR87_RS11050 and ABZR87_RS11055 are separated by 454 nucleotides ABZR87_RS11040: ABZR87_RS11040 - EI24 domain-containing protein, at 2,340,668 to 2,341,525 _RS11040 ABZR87_RS11045: ABZR87_RS11045 - competence/damage-inducible protein A, at 2,341,547 to 2,342,365 _RS11045 ABZR87_RS11050: ABZR87_RS11050 - rhodanese-like domain-containing protein, at 2,342,377 to 2,342,853 _RS11050 ABZR87_RS11055: ABZR87_RS11055 - 3-hydroxylaminophenol mutase, at 2,343,308 to 2,344,723 _RS11055 Position (kb) 2342 2343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2341.379 kb on + strand, within ABZR87_RS11040at 2341.379 kb on + strand, within ABZR87_RS11040at 2341.379 kb on + strand, within ABZR87_RS11040at 2341.379 kb on + strand, within ABZR87_RS11040at 2341.379 kb on + strand, within ABZR87_RS11040at 2341.380 kb on - strand, within ABZR87_RS11040at 2341.380 kb on - strand, within ABZR87_RS11040at 2341.380 kb on - strand, within ABZR87_RS11040at 2341.394 kb on - strand, within ABZR87_RS11040at 2341.523 kb on + strandat 2341.667 kb on + strand, within ABZR87_RS11045at 2341.667 kb on + strand, within ABZR87_RS11045at 2341.667 kb on + strand, within ABZR87_RS11045at 2341.701 kb on + strand, within ABZR87_RS11045at 2341.701 kb on + strand, within ABZR87_RS11045at 2341.701 kb on + strand, within ABZR87_RS11045at 2341.701 kb on + strand, within ABZR87_RS11045at 2341.967 kb on + strand, within ABZR87_RS11045at 2341.968 kb on - strand, within ABZR87_RS11045at 2341.968 kb on - strand, within ABZR87_RS11045at 2341.969 kb on + strand, within ABZR87_RS11045at 2342.063 kb on + strand, within ABZR87_RS11045at 2342.063 kb on + strand, within ABZR87_RS11045at 2342.064 kb on - strand, within ABZR87_RS11045at 2342.064 kb on - strand, within ABZR87_RS11045at 2342.231 kb on + strand, within ABZR87_RS11045at 2342.232 kb on - strand, within ABZR87_RS11045at 2342.291 kb on + strandat 2342.291 kb on + strandat 2342.291 kb on + strandat 2342.291 kb on + strandat 2342.292 kb on - strandat 2342.292 kb on - strandat 2342.448 kb on + strand, within ABZR87_RS11050at 2342.572 kb on + strand, within ABZR87_RS11050at 2342.778 kb on - strand, within ABZR87_RS11050at 2342.885 kb on + strandat 2342.973 kb on + strandat 2342.981 kb on + strandat 2342.981 kb on + strandat 2342.981 kb on + strandat 2342.998 kb on - strandat 2343.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,341,379 + ABZR87_RS11040 0.83 -0.6
2,341,379 + ABZR87_RS11040 0.83 +2.0
2,341,379 + ABZR87_RS11040 0.83 -0.6
2,341,379 + ABZR87_RS11040 0.83 -2.5
2,341,379 + ABZR87_RS11040 0.83 +1.1
2,341,380 - ABZR87_RS11040 0.83 +0.5
2,341,380 - ABZR87_RS11040 0.83 -2.8
2,341,380 - ABZR87_RS11040 0.83 -1.7
2,341,394 - ABZR87_RS11040 0.85 -1.4
2,341,523 + +0.9
2,341,667 + ABZR87_RS11045 0.15 +0.7
2,341,667 + ABZR87_RS11045 0.15 -1.0
2,341,667 + ABZR87_RS11045 0.15 +1.7
2,341,701 + ABZR87_RS11045 0.19 +1.2
2,341,701 + ABZR87_RS11045 0.19 -1.3
2,341,701 + ABZR87_RS11045 0.19 +0.8
2,341,701 + ABZR87_RS11045 0.19 +0.5
2,341,967 + ABZR87_RS11045 0.51 +1.4
2,341,968 - ABZR87_RS11045 0.51 +0.7
2,341,968 - ABZR87_RS11045 0.51 +1.3
2,341,969 + ABZR87_RS11045 0.52 +1.6
2,342,063 + ABZR87_RS11045 0.63 -0.5
2,342,063 + ABZR87_RS11045 0.63 +1.1
2,342,064 - ABZR87_RS11045 0.63 +0.4
2,342,064 - ABZR87_RS11045 0.63 -1.9
2,342,231 + ABZR87_RS11045 0.84 +1.9
2,342,232 - ABZR87_RS11045 0.84 -0.4
2,342,291 + -0.5
2,342,291 + +1.2
2,342,291 + -0.6
2,342,291 + -3.4
2,342,292 - +2.7
2,342,292 - +0.2
2,342,448 + ABZR87_RS11050 0.15 -1.3
2,342,572 + ABZR87_RS11050 0.41 -3.9
2,342,778 - ABZR87_RS11050 0.84 -2.0
2,342,885 + +0.5
2,342,973 + -0.0
2,342,981 + +1.0
2,342,981 + +0.5
2,342,981 + +1.1
2,342,998 - -2.7
2,343,032 + +0.5

Or see this region's nucleotide sequence