Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10795

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10785 and ABZR87_RS10795 are separated by 278 nucleotidesABZR87_RS10795 and ABZR87_RS10800 are separated by 85 nucleotidesABZR87_RS10800 and ABZR87_RS10805 are separated by 23 nucleotidesABZR87_RS10805 and ABZR87_RS10810 overlap by 1 nucleotides ABZR87_RS10785: ABZR87_RS10785 - exodeoxyribonuclease V subunit beta, at 2,283,247 to 2,286,768 _RS10785 ABZR87_RS10795: ABZR87_RS10795 - DNA polymerase III subunit gamma/tau, at 2,287,047 to 2,289,251 _RS10795 ABZR87_RS10800: ABZR87_RS10800 - YbaB/EbfC family nucleoid-associated protein, at 2,289,337 to 2,289,684 _RS10800 ABZR87_RS10805: ABZR87_RS10805 - antibiotic biosynthesis monooxygenase, at 2,289,708 to 2,290,007 _RS10805 ABZR87_RS10810: ABZR87_RS10810 - recombination mediator RecR, at 2,290,007 to 2,290,627 _RS10810 Position (kb) 2287 2288 2289 2290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2286.067 kb on + strand, within ABZR87_RS10785at 2286.068 kb on - strand, within ABZR87_RS10785at 2286.068 kb on - strand, within ABZR87_RS10785at 2286.166 kb on + strand, within ABZR87_RS10785at 2286.167 kb on - strand, within ABZR87_RS10785at 2286.481 kb on - strandat 2286.568 kb on + strandat 2286.576 kb on - strandat 2286.576 kb on - strandat 2286.576 kb on - strandat 2286.626 kb on - strandat 2286.649 kb on + strandat 2286.933 kb on + strandat 2286.933 kb on + strandat 2286.933 kb on + strandat 2286.960 kb on + strandat 2286.960 kb on + strandat 2286.961 kb on - strandat 2287.034 kb on + strandat 2287.035 kb on - strandat 2287.053 kb on + strandat 2287.053 kb on + strandat 2289.586 kb on - strand, within ABZR87_RS10800at 2289.601 kb on - strand, within ABZR87_RS10800at 2289.601 kb on - strand, within ABZR87_RS10800at 2289.643 kb on - strand, within ABZR87_RS10800at 2289.648 kb on + strand, within ABZR87_RS10800at 2289.649 kb on - strand, within ABZR87_RS10800at 2289.649 kb on - strand, within ABZR87_RS10800at 2289.683 kb on - strandat 2289.855 kb on + strand, within ABZR87_RS10805at 2289.856 kb on - strand, within ABZR87_RS10805at 2289.856 kb on - strand, within ABZR87_RS10805at 2289.856 kb on - strand, within ABZR87_RS10805at 2289.921 kb on + strand, within ABZR87_RS10805at 2289.954 kb on + strand, within ABZR87_RS10805at 2289.954 kb on + strand, within ABZR87_RS10805at 2289.954 kb on + strand, within ABZR87_RS10805at 2289.955 kb on - strand, within ABZR87_RS10805at 2290.012 kb on + strandat 2290.013 kb on - strandat 2290.024 kb on + strandat 2290.024 kb on + strandat 2290.024 kb on + strandat 2290.025 kb on - strandat 2290.107 kb on - strand, within ABZR87_RS10810at 2290.201 kb on + strand, within ABZR87_RS10810at 2290.202 kb on - strand, within ABZR87_RS10810at 2290.202 kb on - strand, within ABZR87_RS10810at 2290.202 kb on - strand, within ABZR87_RS10810at 2290.207 kb on + strand, within ABZR87_RS10810at 2290.207 kb on + strand, within ABZR87_RS10810

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,286,067 + ABZR87_RS10785 0.80 -1.6
2,286,068 - ABZR87_RS10785 0.80 +0.1
2,286,068 - ABZR87_RS10785 0.80 -1.3
2,286,166 + ABZR87_RS10785 0.83 -0.3
2,286,167 - ABZR87_RS10785 0.83 +1.2
2,286,481 - -2.1
2,286,568 + -4.2
2,286,576 - -3.1
2,286,576 - -2.0
2,286,576 - +0.1
2,286,626 - -1.7
2,286,649 + +1.7
2,286,933 + +1.6
2,286,933 + -1.2
2,286,933 + +0.8
2,286,960 + -1.1
2,286,960 + +3.0
2,286,961 - -0.7
2,287,034 + -1.4
2,287,035 - +0.0
2,287,053 + -3.0
2,287,053 + +0.1
2,289,586 - ABZR87_RS10800 0.72 -2.4
2,289,601 - ABZR87_RS10800 0.76 -0.5
2,289,601 - ABZR87_RS10800 0.76 -0.9
2,289,643 - ABZR87_RS10800 0.88 -2.5
2,289,648 + ABZR87_RS10800 0.89 -2.7
2,289,649 - ABZR87_RS10800 0.90 -2.0
2,289,649 - ABZR87_RS10800 0.90 +0.1
2,289,683 - -1.4
2,289,855 + ABZR87_RS10805 0.49 +0.6
2,289,856 - ABZR87_RS10805 0.49 +0.1
2,289,856 - ABZR87_RS10805 0.49 -1.3
2,289,856 - ABZR87_RS10805 0.49 -1.2
2,289,921 + ABZR87_RS10805 0.71 +1.6
2,289,954 + ABZR87_RS10805 0.82 +1.0
2,289,954 + ABZR87_RS10805 0.82 -0.9
2,289,954 + ABZR87_RS10805 0.82 -2.3
2,289,955 - ABZR87_RS10805 0.82 +1.8
2,290,012 + -2.8
2,290,013 - +0.1
2,290,024 + -0.4
2,290,024 + +0.1
2,290,024 + +1.8
2,290,025 - -0.0
2,290,107 - ABZR87_RS10810 0.16 -3.4
2,290,201 + ABZR87_RS10810 0.31 -0.3
2,290,202 - ABZR87_RS10810 0.31 +0.5
2,290,202 - ABZR87_RS10810 0.31 +1.7
2,290,202 - ABZR87_RS10810 0.31 +0.1
2,290,207 + ABZR87_RS10810 0.32 +0.2
2,290,207 + ABZR87_RS10810 0.32 +2.9

Or see this region's nucleotide sequence