Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10785 and ABZR87_RS10795 are separated by 278 nucleotides ABZR87_RS10795 and ABZR87_RS10800 are separated by 85 nucleotides ABZR87_RS10800 and ABZR87_RS10805 are separated by 23 nucleotides ABZR87_RS10805 and ABZR87_RS10810 overlap by 1 nucleotides
ABZR87_RS10785: ABZR87_RS10785 - exodeoxyribonuclease V subunit beta, at 2,283,247 to 2,286,768
_RS10785
ABZR87_RS10795: ABZR87_RS10795 - DNA polymerase III subunit gamma/tau, at 2,287,047 to 2,289,251
_RS10795
ABZR87_RS10800: ABZR87_RS10800 - YbaB/EbfC family nucleoid-associated protein, at 2,289,337 to 2,289,684
_RS10800
ABZR87_RS10805: ABZR87_RS10805 - antibiotic biosynthesis monooxygenase, at 2,289,708 to 2,290,007
_RS10805
ABZR87_RS10810: ABZR87_RS10810 - recombination mediator RecR, at 2,290,007 to 2,290,627
_RS10810
Position (kb)
2287
2288
2289
2290 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2286.067 kb on + strand, within ABZR87_RS10785 at 2286.068 kb on - strand, within ABZR87_RS10785 at 2286.068 kb on - strand, within ABZR87_RS10785 at 2286.166 kb on + strand, within ABZR87_RS10785 at 2286.167 kb on - strand, within ABZR87_RS10785 at 2286.481 kb on - strand at 2286.568 kb on + strand at 2286.576 kb on - strand at 2286.576 kb on - strand at 2286.576 kb on - strand at 2286.626 kb on - strand at 2286.649 kb on + strand at 2286.933 kb on + strand at 2286.933 kb on + strand at 2286.933 kb on + strand at 2286.960 kb on + strand at 2286.960 kb on + strand at 2286.961 kb on - strand at 2287.034 kb on + strand at 2287.035 kb on - strand at 2287.053 kb on + strand at 2287.053 kb on + strand at 2289.586 kb on - strand, within ABZR87_RS10800 at 2289.601 kb on - strand, within ABZR87_RS10800 at 2289.601 kb on - strand, within ABZR87_RS10800 at 2289.643 kb on - strand, within ABZR87_RS10800 at 2289.648 kb on + strand, within ABZR87_RS10800 at 2289.649 kb on - strand, within ABZR87_RS10800 at 2289.649 kb on - strand, within ABZR87_RS10800 at 2289.683 kb on - strand at 2289.855 kb on + strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.921 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.955 kb on - strand, within ABZR87_RS10805 at 2290.012 kb on + strand at 2290.013 kb on - strand at 2290.024 kb on + strand at 2290.024 kb on + strand at 2290.024 kb on + strand at 2290.025 kb on - strand at 2290.107 kb on - strand, within ABZR87_RS10810 at 2290.201 kb on + strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.207 kb on + strand, within ABZR87_RS10810 at 2290.207 kb on + strand, within ABZR87_RS10810
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,286,067 + ABZR87_RS10785 0.80 -1.6 2,286,068 - ABZR87_RS10785 0.80 +0.1 2,286,068 - ABZR87_RS10785 0.80 -1.3 2,286,166 + ABZR87_RS10785 0.83 -0.3 2,286,167 - ABZR87_RS10785 0.83 +1.2 2,286,481 - -2.1 2,286,568 + -4.2 2,286,576 - -3.1 2,286,576 - -2.0 2,286,576 - +0.1 2,286,626 - -1.7 2,286,649 + +1.7 2,286,933 + +1.6 2,286,933 + -1.2 2,286,933 + +0.8 2,286,960 + -1.1 2,286,960 + +3.0 2,286,961 - -0.7 2,287,034 + -1.4 2,287,035 - +0.0 2,287,053 + -3.0 2,287,053 + +0.1 2,289,586 - ABZR87_RS10800 0.72 -2.4 2,289,601 - ABZR87_RS10800 0.76 -0.5 2,289,601 - ABZR87_RS10800 0.76 -0.9 2,289,643 - ABZR87_RS10800 0.88 -2.5 2,289,648 + ABZR87_RS10800 0.89 -2.7 2,289,649 - ABZR87_RS10800 0.90 -2.0 2,289,649 - ABZR87_RS10800 0.90 +0.1 2,289,683 - -1.4 2,289,855 + ABZR87_RS10805 0.49 +0.6 2,289,856 - ABZR87_RS10805 0.49 +0.1 2,289,856 - ABZR87_RS10805 0.49 -1.3 2,289,856 - ABZR87_RS10805 0.49 -1.2 2,289,921 + ABZR87_RS10805 0.71 +1.6 2,289,954 + ABZR87_RS10805 0.82 +1.0 2,289,954 + ABZR87_RS10805 0.82 -0.9 2,289,954 + ABZR87_RS10805 0.82 -2.3 2,289,955 - ABZR87_RS10805 0.82 +1.8 2,290,012 + -2.8 2,290,013 - +0.1 2,290,024 + -0.4 2,290,024 + +0.1 2,290,024 + +1.8 2,290,025 - -0.0 2,290,107 - ABZR87_RS10810 0.16 -3.4 2,290,201 + ABZR87_RS10810 0.31 -0.3 2,290,202 - ABZR87_RS10810 0.31 +0.5 2,290,202 - ABZR87_RS10810 0.31 +1.7 2,290,202 - ABZR87_RS10810 0.31 +0.1 2,290,207 + ABZR87_RS10810 0.32 +0.2 2,290,207 + ABZR87_RS10810 0.32 +2.9
Or see this region's nucleotide sequence