Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10710 and ABZR87_RS10715 are separated by 126 nucleotides ABZR87_RS10715 and ABZR87_RS10720 are separated by 119 nucleotides ABZR87_RS10720 and ABZR87_RS10725 are separated by 64 nucleotides ABZR87_RS10725 and ABZR87_RS10730 are separated by 104 nucleotides
ABZR87_RS10710: ABZR87_RS10710 - glutamate--tRNA ligase, at 2,267,635 to 2,269,032
_RS10710
ABZR87_RS10715: ABZR87_RS10715 - tRNA-Ala, at 2,269,159 to 2,269,234
_RS10715
ABZR87_RS10720: ABZR87_RS10720 - tRNA-Glu, at 2,269,354 to 2,269,429
_RS10720
ABZR87_RS10725: ABZR87_RS10725 - tRNA-Asp, at 2,269,494 to 2,269,570
_RS10725
ABZR87_RS10730: ABZR87_RS10730 - MATE family efflux transporter, at 2,269,675 to 2,271,021
_RS10730
Position (kb)
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2269.153 kb on + strand at 2269.153 kb on + strand at 2269.617 kb on - strand at 2269.706 kb on + strand at 2269.706 kb on + strand at 2269.707 kb on - strand at 2269.820 kb on + strand, within ABZR87_RS10730 at 2269.820 kb on + strand, within ABZR87_RS10730 at 2269.837 kb on + strand, within ABZR87_RS10730 at 2269.837 kb on + strand, within ABZR87_RS10730 at 2269.838 kb on - strand, within ABZR87_RS10730 at 2269.838 kb on - strand, within ABZR87_RS10730 at 2269.859 kb on + strand, within ABZR87_RS10730 at 2269.860 kb on - strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.941 kb on - strand, within ABZR87_RS10730 at 2269.941 kb on - strand, within ABZR87_RS10730 at 2270.000 kb on + strand, within ABZR87_RS10730 at 2270.001 kb on - strand, within ABZR87_RS10730 at 2270.001 kb on - strand, within ABZR87_RS10730 at 2270.164 kb on + strand, within ABZR87_RS10730 at 2270.177 kb on + strand, within ABZR87_RS10730 at 2270.177 kb on + strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.225 kb on - strand, within ABZR87_RS10730 at 2270.225 kb on - strand, within ABZR87_RS10730
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,269,153 + -2.4 2,269,153 + -2.5 2,269,617 - +0.4 2,269,706 + +2.0 2,269,706 + -2.2 2,269,707 - +0.9 2,269,820 + ABZR87_RS10730 0.11 -0.4 2,269,820 + ABZR87_RS10730 0.11 -0.3 2,269,837 + ABZR87_RS10730 0.12 +3.0 2,269,837 + ABZR87_RS10730 0.12 -0.7 2,269,838 - ABZR87_RS10730 0.12 +0.3 2,269,838 - ABZR87_RS10730 0.12 +2.6 2,269,859 + ABZR87_RS10730 0.14 +1.5 2,269,860 - ABZR87_RS10730 0.14 -0.6 2,269,889 + ABZR87_RS10730 0.16 +1.2 2,269,889 + ABZR87_RS10730 0.16 +2.2 2,269,889 + ABZR87_RS10730 0.16 -0.6 2,269,889 + ABZR87_RS10730 0.16 +1.1 2,269,890 - ABZR87_RS10730 0.16 +1.7 2,269,890 - ABZR87_RS10730 0.16 -1.1 2,269,890 - ABZR87_RS10730 0.16 +1.4 2,269,941 - ABZR87_RS10730 0.20 +3.1 2,269,941 - ABZR87_RS10730 0.20 +0.8 2,270,000 + ABZR87_RS10730 0.24 -1.7 2,270,001 - ABZR87_RS10730 0.24 +1.5 2,270,001 - ABZR87_RS10730 0.24 +2.1 2,270,164 + ABZR87_RS10730 0.36 +1.4 2,270,177 + ABZR87_RS10730 0.37 +0.6 2,270,177 + ABZR87_RS10730 0.37 +2.0 2,270,178 - ABZR87_RS10730 0.37 -0.7 2,270,178 - ABZR87_RS10730 0.37 -2.6 2,270,178 - ABZR87_RS10730 0.37 +1.6 2,270,178 - ABZR87_RS10730 0.37 +2.5 2,270,178 - ABZR87_RS10730 0.37 +1.3 2,270,178 - ABZR87_RS10730 0.37 +2.9 2,270,225 - ABZR87_RS10730 0.41 -1.6 2,270,225 - ABZR87_RS10730 0.41 -0.8
Or see this region's nucleotide sequence