Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08255

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08250 and ABZR87_RS08255 are separated by 14 nucleotidesABZR87_RS08255 and ABZR87_RS08260 overlap by 4 nucleotides ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492 _RS08250 ABZR87_RS08255: ABZR87_RS08255 - ABC-type transport auxiliary lipoprotein family protein, at 1,753,507 to 1,754,175 _RS08255 ABZR87_RS08260: ABZR87_RS08260 - intermembrane transport protein PqiB, at 1,754,172 to 1,755,815 _RS08260 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.652 kb on + strand, within ABZR87_RS08250at 1752.677 kb on + strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.919 kb on + strand, within ABZR87_RS08250at 1752.919 kb on + strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1753.142 kb on - strand, within ABZR87_RS08250at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.805 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.228 kb on - strandat 1754.563 kb on + strand, within ABZR87_RS08260at 1754.563 kb on + strand, within ABZR87_RS08260at 1754.563 kb on + strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,752,605 - ABZR87_RS08250 0.39 +0.3
1,752,605 - ABZR87_RS08250 0.39 -0.3
1,752,652 + ABZR87_RS08250 0.43 -0.3
1,752,677 + ABZR87_RS08250 0.44 -2.8
1,752,678 - ABZR87_RS08250 0.44 -4.0
1,752,678 - ABZR87_RS08250 0.44 -0.3
1,752,680 + ABZR87_RS08250 0.44 -3.8
1,752,680 + ABZR87_RS08250 0.44 -0.8
1,752,680 + ABZR87_RS08250 0.44 -2.3
1,752,681 - ABZR87_RS08250 0.45 -0.3
1,752,681 - ABZR87_RS08250 0.45 -1.8
1,752,681 - ABZR87_RS08250 0.45 +0.9
1,752,919 + ABZR87_RS08250 0.61 -1.2
1,752,919 + ABZR87_RS08250 0.61 +0.7
1,752,920 - ABZR87_RS08250 0.61 +1.1
1,752,920 - ABZR87_RS08250 0.61 -2.1
1,752,920 - ABZR87_RS08250 0.61 +0.6
1,752,920 - ABZR87_RS08250 0.61 +1.5
1,752,920 - ABZR87_RS08250 0.61 +0.2
1,752,920 - ABZR87_RS08250 0.61 +1.6
1,752,923 + ABZR87_RS08250 0.61 -2.0
1,752,923 + ABZR87_RS08250 0.61 -2.2
1,752,923 + ABZR87_RS08250 0.61 -1.1
1,752,923 + ABZR87_RS08250 0.61 +1.3
1,752,923 + ABZR87_RS08250 0.61 -2.7
1,752,923 + ABZR87_RS08250 0.61 +0.1
1,752,923 + ABZR87_RS08250 0.61 +1.1
1,752,923 + ABZR87_RS08250 0.61 +1.5
1,752,923 + ABZR87_RS08250 0.61 -0.9
1,752,923 + ABZR87_RS08250 0.61 +1.0
1,752,923 + ABZR87_RS08250 0.61 +0.4
1,752,923 + ABZR87_RS08250 0.61 +0.7
1,752,923 + ABZR87_RS08250 0.61 -1.2
1,752,923 + ABZR87_RS08250 0.61 -1.5
1,752,923 + ABZR87_RS08250 0.61 +0.3
1,752,923 + ABZR87_RS08250 0.61 -1.2
1,752,923 + ABZR87_RS08250 0.61 +0.5
1,752,923 + ABZR87_RS08250 0.61 -1.0
1,752,923 + ABZR87_RS08250 0.61 -0.7
1,752,924 - ABZR87_RS08250 0.61 +0.2
1,752,924 - ABZR87_RS08250 0.61 -0.9
1,752,924 - ABZR87_RS08250 0.61 +1.3
1,752,924 - ABZR87_RS08250 0.61 -0.9
1,752,924 - ABZR87_RS08250 0.61 +0.2
1,752,924 - ABZR87_RS08250 0.61 +1.8
1,752,995 + ABZR87_RS08250 0.66 +0.9
1,752,995 + ABZR87_RS08250 0.66 -1.3
1,752,995 + ABZR87_RS08250 0.66 +0.4
1,752,995 + ABZR87_RS08250 0.66 -0.0
1,752,995 + ABZR87_RS08250 0.66 +1.0
1,752,995 + ABZR87_RS08250 0.66 -1.3
1,752,995 + ABZR87_RS08250 0.66 +0.8
1,752,996 - ABZR87_RS08250 0.66 +1.2
1,752,996 - ABZR87_RS08250 0.66 +0.5
1,752,996 - ABZR87_RS08250 0.66 +0.9
1,752,996 - ABZR87_RS08250 0.66 +2.9
1,752,996 - ABZR87_RS08250 0.66 +2.3
1,752,996 - ABZR87_RS08250 0.66 +0.3
1,752,996 - ABZR87_RS08250 0.66 -0.1
1,753,142 - ABZR87_RS08250 0.76 +0.8
1,753,778 + ABZR87_RS08255 0.41 +1.0
1,753,778 + ABZR87_RS08255 0.41 +0.7
1,753,779 - ABZR87_RS08255 0.41 -0.7
1,753,779 - ABZR87_RS08255 0.41 +0.6
1,753,805 + ABZR87_RS08255 0.45 -1.3
1,753,956 + ABZR87_RS08255 0.67 +2.4
1,753,956 + ABZR87_RS08255 0.67 -0.8
1,753,957 - ABZR87_RS08255 0.67 -2.2
1,753,957 - ABZR87_RS08255 0.67 +0.4
1,753,957 - ABZR87_RS08255 0.67 -0.9
1,754,067 + ABZR87_RS08255 0.84 +0.7
1,754,067 + ABZR87_RS08255 0.84 -2.0
1,754,067 + ABZR87_RS08255 0.84 -3.8
1,754,067 + ABZR87_RS08255 0.84 +1.5
1,754,068 - ABZR87_RS08255 0.84 -0.1
1,754,068 - ABZR87_RS08255 0.84 +1.6
1,754,068 - ABZR87_RS08255 0.84 +3.6
1,754,068 - ABZR87_RS08255 0.84 +2.6
1,754,068 - ABZR87_RS08255 0.84 -0.3
1,754,068 - ABZR87_RS08255 0.84 +2.5
1,754,068 - ABZR87_RS08255 0.84 +2.0
1,754,068 - ABZR87_RS08255 0.84 -0.0
1,754,068 - ABZR87_RS08255 0.84 -1.2
1,754,228 - -1.8
1,754,563 + ABZR87_RS08260 0.24 +1.7
1,754,563 + ABZR87_RS08260 0.24 -2.4
1,754,563 + ABZR87_RS08260 0.24 -1.8
1,754,564 - ABZR87_RS08260 0.24 -2.8
1,754,564 - ABZR87_RS08260 0.24 +3.5
1,754,564 - ABZR87_RS08260 0.24 +0.3
1,754,564 - ABZR87_RS08260 0.24 +1.2
1,754,834 - ABZR87_RS08260 0.40 -0.3
1,754,834 - ABZR87_RS08260 0.40 +1.4
1,754,834 - ABZR87_RS08260 0.40 +1.2
1,754,926 + ABZR87_RS08260 0.46 +1.5
1,754,926 + ABZR87_RS08260 0.46 -1.7
1,754,927 - ABZR87_RS08260 0.46 -0.9
1,754,927 - ABZR87_RS08260 0.46 +2.0
1,754,927 - ABZR87_RS08260 0.46 +1.1
1,754,927 - ABZR87_RS08260 0.46 +1.4

Or see this region's nucleotide sequence