Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08170

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08165 and ABZR87_RS08170 are separated by 27 nucleotidesABZR87_RS08170 and ABZR87_RS08175 are separated by 45 nucleotidesABZR87_RS08175 and ABZR87_RS08180 are separated by 175 nucleotides ABZR87_RS08165: ABZR87_RS08165 - amidase, at 1,737,191 to 1,738,549 _RS08165 ABZR87_RS08170: ABZR87_RS08170 - DUF2848 domain-containing protein, at 1,738,577 to 1,739,254 _RS08170 ABZR87_RS08175: ABZR87_RS08175 - GntR family transcriptional regulator, at 1,739,300 to 1,740,016 _RS08175 ABZR87_RS08180: ABZR87_RS08180 - flavin-dependent oxidoreductase, at 1,740,192 to 1,741,457 _RS08180 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1737.809 kb on + strand, within ABZR87_RS08165at 1737.810 kb on - strand, within ABZR87_RS08165at 1738.416 kb on + strandat 1738.417 kb on - strandat 1738.417 kb on - strandat 1738.608 kb on + strandat 1738.609 kb on - strandat 1738.712 kb on - strand, within ABZR87_RS08170at 1738.800 kb on + strand, within ABZR87_RS08170at 1738.935 kb on + strand, within ABZR87_RS08170at 1738.935 kb on + strand, within ABZR87_RS08170at 1738.935 kb on + strand, within ABZR87_RS08170at 1739.001 kb on + strand, within ABZR87_RS08170at 1739.002 kb on - strand, within ABZR87_RS08170at 1739.088 kb on + strand, within ABZR87_RS08170at 1739.088 kb on + strand, within ABZR87_RS08170at 1739.088 kb on + strand, within ABZR87_RS08170at 1739.088 kb on + strand, within ABZR87_RS08170at 1739.088 kb on + strand, within ABZR87_RS08170at 1739.089 kb on - strand, within ABZR87_RS08170at 1739.089 kb on - strand, within ABZR87_RS08170at 1739.089 kb on - strand, within ABZR87_RS08170at 1739.415 kb on + strand, within ABZR87_RS08175at 1739.415 kb on + strand, within ABZR87_RS08175at 1739.415 kb on + strand, within ABZR87_RS08175at 1739.904 kb on + strand, within ABZR87_RS08175at 1739.904 kb on + strand, within ABZR87_RS08175at 1739.904 kb on + strand, within ABZR87_RS08175at 1740.112 kb on + strandat 1740.112 kb on + strandat 1740.113 kb on - strandat 1740.116 kb on + strandat 1740.116 kb on + strandat 1740.116 kb on + strandat 1740.117 kb on - strandat 1740.117 kb on - strandat 1740.117 kb on - strandat 1740.117 kb on - strandat 1740.117 kb on - strandat 1740.128 kb on + strandat 1740.128 kb on + strandat 1740.129 kb on - strandat 1740.129 kb on - strandat 1740.129 kb on - strandat 1740.129 kb on - strandat 1740.129 kb on - strandat 1740.129 kb on - strandat 1740.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,737,809 + ABZR87_RS08165 0.45 -0.5
1,737,810 - ABZR87_RS08165 0.46 -0.3
1,738,416 + -2.9
1,738,417 - -2.4
1,738,417 - -3.2
1,738,608 + +1.9
1,738,609 - -2.2
1,738,712 - ABZR87_RS08170 0.20 +3.0
1,738,800 + ABZR87_RS08170 0.33 -0.3
1,738,935 + ABZR87_RS08170 0.53 +1.4
1,738,935 + ABZR87_RS08170 0.53 -3.9
1,738,935 + ABZR87_RS08170 0.53 +3.1
1,739,001 + ABZR87_RS08170 0.63 -1.1
1,739,002 - ABZR87_RS08170 0.63 +1.7
1,739,088 + ABZR87_RS08170 0.75 +2.0
1,739,088 + ABZR87_RS08170 0.75 -0.5
1,739,088 + ABZR87_RS08170 0.75 -2.6
1,739,088 + ABZR87_RS08170 0.75 -0.7
1,739,088 + ABZR87_RS08170 0.75 +0.9
1,739,089 - ABZR87_RS08170 0.76 +1.3
1,739,089 - ABZR87_RS08170 0.76 -2.3
1,739,089 - ABZR87_RS08170 0.76 -0.8
1,739,415 + ABZR87_RS08175 0.16 -3.1
1,739,415 + ABZR87_RS08175 0.16 +0.1
1,739,415 + ABZR87_RS08175 0.16 -1.5
1,739,904 + ABZR87_RS08175 0.84 +1.0
1,739,904 + ABZR87_RS08175 0.84 +3.1
1,739,904 + ABZR87_RS08175 0.84 -0.6
1,740,112 + -1.9
1,740,112 + +2.0
1,740,113 - -2.1
1,740,116 + -2.9
1,740,116 + +2.2
1,740,116 + +2.4
1,740,117 - -3.7
1,740,117 - -0.0
1,740,117 - -1.1
1,740,117 - -1.9
1,740,117 - -2.4
1,740,128 + -1.3
1,740,128 + -3.1
1,740,129 - -3.5
1,740,129 - -0.6
1,740,129 - +0.5
1,740,129 - -0.3
1,740,129 - +2.2
1,740,129 - +2.2
1,740,129 - -2.4

Or see this region's nucleotide sequence