Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06585 and ABZR87_RS06590 are separated by 42 nucleotides ABZR87_RS06590 and ABZR87_RS06595 are separated by 161 nucleotides ABZR87_RS06595 and ABZR87_RS06600 are separated by 150 nucleotides
ABZR87_RS06585: ABZR87_RS06585 - lipoyl synthase, at 1,402,628 to 1,403,629
_RS06585
ABZR87_RS06590: ABZR87_RS06590 - lipoyl(octanoyl) transferase LipB, at 1,403,672 to 1,404,361
_RS06590
ABZR87_RS06595: ABZR87_RS06595 - DUF2917 domain-containing protein, at 1,404,523 to 1,404,882
_RS06595
ABZR87_RS06600: ABZR87_RS06600 - transcriptional regulator GcvA, at 1,405,033 to 1,405,995
_RS06600
Position (kb)
1403
1404
1405 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1404.373 kb on + strand at 1404.770 kb on - strand, within ABZR87_RS06595 at 1404.770 kb on - strand, within ABZR87_RS06595 at 1404.857 kb on - strand at 1404.869 kb on - strand at 1404.869 kb on - strand at 1404.871 kb on + strand at 1404.872 kb on - strand at 1404.872 kb on - strand at 1404.872 kb on - strand at 1404.934 kb on - strand at 1404.952 kb on + strand at 1404.952 kb on + strand at 1404.952 kb on + strand at 1404.953 kb on - strand at 1404.953 kb on - strand at 1404.953 kb on - strand at 1404.953 kb on - strand at 1404.962 kb on + strand at 1404.962 kb on + strand at 1404.962 kb on + strand at 1404.963 kb on - strand at 1404.963 kb on - strand at 1404.963 kb on - strand at 1404.963 kb on - strand at 1404.963 kb on - strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.964 kb on + strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.965 kb on - strand at 1404.966 kb on + strand at 1404.966 kb on + strand at 1404.966 kb on + strand at 1404.966 kb on + strand at 1404.966 kb on + strand at 1404.966 kb on + strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.967 kb on - strand at 1404.982 kb on - strand at 1404.995 kb on + strand at 1404.996 kb on - strand at 1405.012 kb on + strand at 1405.105 kb on + strand at 1405.105 kb on + strand at 1405.106 kb on - strand at 1405.252 kb on + strand, within ABZR87_RS06600 at 1405.252 kb on + strand, within ABZR87_RS06600 at 1405.252 kb on + strand, within ABZR87_RS06600 at 1405.252 kb on + strand, within ABZR87_RS06600 at 1405.252 kb on + strand, within ABZR87_RS06600 at 1405.253 kb on - strand, within ABZR87_RS06600
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 1,404,373 + +0.8 1,404,770 - ABZR87_RS06595 0.69 -2.6 1,404,770 - ABZR87_RS06595 0.69 -2.2 1,404,857 - -0.2 1,404,869 - -1.6 1,404,869 - +1.0 1,404,871 + -0.7 1,404,872 - -1.5 1,404,872 - -3.3 1,404,872 - -0.2 1,404,934 - -2.2 1,404,952 + -1.0 1,404,952 + +1.8 1,404,952 + +1.8 1,404,953 - -3.1 1,404,953 - +1.1 1,404,953 - -0.2 1,404,953 - -0.8 1,404,962 + -0.2 1,404,962 + +0.9 1,404,962 + -1.4 1,404,963 - -2.9 1,404,963 - +0.8 1,404,963 - -0.5 1,404,963 - -3.0 1,404,963 - +2.0 1,404,964 + -3.3 1,404,964 + +1.5 1,404,964 + +1.8 1,404,964 + +0.6 1,404,964 + +3.5 1,404,964 + +1.0 1,404,964 + -1.2 1,404,964 + -2.0 1,404,964 + -1.0 1,404,964 + +0.1 1,404,964 + +4.9 1,404,964 + -0.8 1,404,964 + +2.1 1,404,964 + +0.1 1,404,964 + +2.8 1,404,964 + +2.6 1,404,964 + -3.0 1,404,964 + +0.2 1,404,964 + +0.2 1,404,964 + -2.4 1,404,964 + +1.8 1,404,965 - -0.5 1,404,965 - +1.8 1,404,965 - +1.2 1,404,965 - -1.9 1,404,965 - +1.2 1,404,965 - +0.3 1,404,965 - -1.6 1,404,965 - +0.9 1,404,965 - +0.4 1,404,965 - -2.3 1,404,965 - -0.1 1,404,965 - +0.3 1,404,965 - +1.7 1,404,965 - +1.8 1,404,965 - -0.0 1,404,965 - -1.1 1,404,965 - +4.0 1,404,965 - +1.8 1,404,965 - -1.0 1,404,965 - -1.7 1,404,965 - +1.1 1,404,965 - +1.7 1,404,965 - +1.8 1,404,965 - -2.5 1,404,965 - -2.0 1,404,965 - -2.0 1,404,965 - +1.9 1,404,965 - -3.6 1,404,965 - +0.1 1,404,965 - -2.8 1,404,965 - +0.4 1,404,965 - +2.3 1,404,965 - -0.3 1,404,965 - -0.2 1,404,966 + +1.4 1,404,966 + +2.2 1,404,966 + +3.5 1,404,966 + +0.6 1,404,966 + -1.9 1,404,966 + +0.8 1,404,967 - +0.4 1,404,967 - -2.2 1,404,967 - +2.2 1,404,967 - +1.1 1,404,967 - -3.8 1,404,967 - +1.5 1,404,967 - -3.0 1,404,967 - +0.6 1,404,967 - -0.6 1,404,967 - +2.1 1,404,967 - +0.5 1,404,967 - -0.1 1,404,967 - -2.4 1,404,982 - -0.2 1,404,995 + +0.7 1,404,996 - +0.8 1,405,012 + +1.1 1,405,105 + +1.2 1,405,105 + +1.3 1,405,106 - +2.3 1,405,252 + ABZR87_RS06600 0.23 +1.1 1,405,252 + ABZR87_RS06600 0.23 -0.6 1,405,252 + ABZR87_RS06600 0.23 -2.6 1,405,252 + ABZR87_RS06600 0.23 -3.2 1,405,252 + ABZR87_RS06600 0.23 +0.7 1,405,253 - ABZR87_RS06600 0.23 -0.8
Or see this region's nucleotide sequence