Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06225

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06220 and ABZR87_RS06225 are separated by 77 nucleotidesABZR87_RS06225 and ABZR87_RS06230 are separated by 6 nucleotidesABZR87_RS06230 and ABZR87_RS06235 are separated by 61 nucleotides ABZR87_RS06220: ABZR87_RS06220 - biotin carboxylase N-terminal domain-containing protein, at 1,327,688 to 1,329,682 _RS06220 ABZR87_RS06225: ABZR87_RS06225 - AMP-binding protein, at 1,329,760 to 1,331,346 _RS06225 ABZR87_RS06230: ABZR87_RS06230 - TetR/AcrR family transcriptional regulator, at 1,331,353 to 1,332,042 _RS06230 ABZR87_RS06235: ABZR87_RS06235 - MBL fold metallo-hydrolase, at 1,332,104 to 1,333,057 _RS06235 Position (kb) 1329 1330 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1328.852 kb on + strand, within ABZR87_RS06220at 1328.855 kb on + strand, within ABZR87_RS06220at 1328.855 kb on + strand, within ABZR87_RS06220at 1329.182 kb on + strand, within ABZR87_RS06220at 1329.420 kb on + strand, within ABZR87_RS06220at 1329.421 kb on + strand, within ABZR87_RS06220at 1329.428 kb on + strand, within ABZR87_RS06220at 1329.429 kb on - strand, within ABZR87_RS06220at 1329.429 kb on - strand, within ABZR87_RS06220at 1329.429 kb on - strand, within ABZR87_RS06220at 1329.429 kb on - strand, within ABZR87_RS06220at 1329.429 kb on - strand, within ABZR87_RS06220at 1329.825 kb on + strandat 1329.826 kb on - strandat 1329.826 kb on - strandat 1329.926 kb on - strand, within ABZR87_RS06225at 1330.016 kb on - strand, within ABZR87_RS06225at 1330.084 kb on + strand, within ABZR87_RS06225at 1330.085 kb on - strand, within ABZR87_RS06225at 1330.085 kb on - strand, within ABZR87_RS06225at 1330.085 kb on - strand, within ABZR87_RS06225at 1330.136 kb on - strand, within ABZR87_RS06225at 1330.251 kb on + strand, within ABZR87_RS06225at 1330.301 kb on - strand, within ABZR87_RS06225at 1330.301 kb on - strand, within ABZR87_RS06225at 1330.301 kb on - strand, within ABZR87_RS06225at 1330.301 kb on - strand, within ABZR87_RS06225at 1330.301 kb on - strand, within ABZR87_RS06225at 1330.577 kb on - strand, within ABZR87_RS06225at 1330.577 kb on - strand, within ABZR87_RS06225at 1330.750 kb on + strand, within ABZR87_RS06225at 1330.750 kb on + strand, within ABZR87_RS06225at 1330.750 kb on + strand, within ABZR87_RS06225at 1330.750 kb on + strand, within ABZR87_RS06225at 1330.751 kb on - strand, within ABZR87_RS06225at 1330.789 kb on + strand, within ABZR87_RS06225at 1330.789 kb on + strand, within ABZR87_RS06225at 1330.790 kb on - strand, within ABZR87_RS06225at 1330.790 kb on - strand, within ABZR87_RS06225at 1330.790 kb on - strand, within ABZR87_RS06225at 1330.906 kb on + strand, within ABZR87_RS06225at 1330.910 kb on - strand, within ABZR87_RS06225at 1331.355 kb on - strandat 1331.355 kb on - strandat 1331.376 kb on + strandat 1331.377 kb on - strandat 1331.377 kb on - strandat 1331.441 kb on + strand, within ABZR87_RS06230at 1331.441 kb on + strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.558 kb on + strand, within ABZR87_RS06230at 1331.559 kb on - strand, within ABZR87_RS06230at 1331.618 kb on + strand, within ABZR87_RS06230at 1331.663 kb on + strand, within ABZR87_RS06230at 1331.664 kb on - strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.805 kb on - strand, within ABZR87_RS06230at 1331.805 kb on - strand, within ABZR87_RS06230

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,328,852 + ABZR87_RS06220 0.58 +2.3
1,328,855 + ABZR87_RS06220 0.58 +0.4
1,328,855 + ABZR87_RS06220 0.58 +0.0
1,329,182 + ABZR87_RS06220 0.75 +1.2
1,329,420 + ABZR87_RS06220 0.87 +0.2
1,329,421 + ABZR87_RS06220 0.87 +0.2
1,329,428 + ABZR87_RS06220 0.87 +0.4
1,329,429 - ABZR87_RS06220 0.87 -0.5
1,329,429 - ABZR87_RS06220 0.87 +1.4
1,329,429 - ABZR87_RS06220 0.87 -0.7
1,329,429 - ABZR87_RS06220 0.87 -2.2
1,329,429 - ABZR87_RS06220 0.87 -3.0
1,329,825 + +1.2
1,329,826 - -1.1
1,329,826 - -1.2
1,329,926 - ABZR87_RS06225 0.10 -0.5
1,330,016 - ABZR87_RS06225 0.16 -1.8
1,330,084 + ABZR87_RS06225 0.20 +1.1
1,330,085 - ABZR87_RS06225 0.20 +2.1
1,330,085 - ABZR87_RS06225 0.20 -2.3
1,330,085 - ABZR87_RS06225 0.20 +0.3
1,330,136 - ABZR87_RS06225 0.24 -2.8
1,330,251 + ABZR87_RS06225 0.31 +0.5
1,330,301 - ABZR87_RS06225 0.34 +1.6
1,330,301 - ABZR87_RS06225 0.34 +1.1
1,330,301 - ABZR87_RS06225 0.34 -0.6
1,330,301 - ABZR87_RS06225 0.34 +0.4
1,330,301 - ABZR87_RS06225 0.34 -0.7
1,330,577 - ABZR87_RS06225 0.51 +1.0
1,330,577 - ABZR87_RS06225 0.51 -0.8
1,330,750 + ABZR87_RS06225 0.62 +2.4
1,330,750 + ABZR87_RS06225 0.62 +0.2
1,330,750 + ABZR87_RS06225 0.62 -0.2
1,330,750 + ABZR87_RS06225 0.62 +1.3
1,330,751 - ABZR87_RS06225 0.62 -0.5
1,330,789 + ABZR87_RS06225 0.65 -2.2
1,330,789 + ABZR87_RS06225 0.65 -1.6
1,330,790 - ABZR87_RS06225 0.65 -3.2
1,330,790 - ABZR87_RS06225 0.65 +1.6
1,330,790 - ABZR87_RS06225 0.65 -2.8
1,330,906 + ABZR87_RS06225 0.72 -1.5
1,330,910 - ABZR87_RS06225 0.72 +0.2
1,331,355 - +1.4
1,331,355 - +0.7
1,331,376 + +0.5
1,331,377 - +0.8
1,331,377 - -0.5
1,331,441 + ABZR87_RS06230 0.13 +3.3
1,331,441 + ABZR87_RS06230 0.13 +0.8
1,331,442 - ABZR87_RS06230 0.13 +1.5
1,331,442 - ABZR87_RS06230 0.13 -0.3
1,331,442 - ABZR87_RS06230 0.13 -3.5
1,331,442 - ABZR87_RS06230 0.13 +3.0
1,331,558 + ABZR87_RS06230 0.30 +2.8
1,331,559 - ABZR87_RS06230 0.30 +2.8
1,331,618 + ABZR87_RS06230 0.38 -1.1
1,331,663 + ABZR87_RS06230 0.45 -1.0
1,331,664 - ABZR87_RS06230 0.45 -1.5
1,331,804 + ABZR87_RS06230 0.65 -2.8
1,331,804 + ABZR87_RS06230 0.65 -0.5
1,331,804 + ABZR87_RS06230 0.65 -1.6
1,331,804 + ABZR87_RS06230 0.65 -1.3
1,331,805 - ABZR87_RS06230 0.66 +0.7
1,331,805 - ABZR87_RS06230 0.66 +0.7

Or see this region's nucleotide sequence