Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04350

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04340 and ABZR87_RS04345 are separated by 14 nucleotidesABZR87_RS04345 and ABZR87_RS04350 are separated by 15 nucleotidesABZR87_RS04350 and ABZR87_RS04355 are separated by 143 nucleotides ABZR87_RS04340: ABZR87_RS04340 - septum site-determining protein MinD, at 905,972 to 906,790 _RS04340 ABZR87_RS04345: ABZR87_RS04345 - cell division topological specificity factor MinE, at 906,805 to 907,059 _RS04345 ABZR87_RS04350: ABZR87_RS04350 - citrate synthase family protein, at 907,075 to 908,307 _RS04350 ABZR87_RS04355: ABZR87_RS04355 - CoA transferase, at 908,451 to 909,848 _RS04355 Position (kb) 907 908 909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.687 kb on - strand, within ABZR87_RS04340at 906.734 kb on + strandat 906.735 kb on - strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.788 kb on + strandat 907.136 kb on + strandat 907.136 kb on + strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.409 kb on + strand, within ABZR87_RS04350at 907.410 kb on - strand, within ABZR87_RS04350at 907.410 kb on - strand, within ABZR87_RS04350at 907.766 kb on - strand, within ABZR87_RS04350at 907.766 kb on - strand, within ABZR87_RS04350at 907.866 kb on + strand, within ABZR87_RS04350at 907.867 kb on - strand, within ABZR87_RS04350at 907.867 kb on - strand, within ABZR87_RS04350at 907.914 kb on - strand, within ABZR87_RS04350at 908.039 kb on + strand, within ABZR87_RS04350at 908.040 kb on - strand, within ABZR87_RS04350at 908.237 kb on + strandat 908.237 kb on + strandat 908.237 kb on + strandat 908.237 kb on + strandat 908.237 kb on + strandat 908.237 kb on + strandat 908.237 kb on + strandat 908.238 kb on - strandat 908.238 kb on - strandat 908.238 kb on - strandat 908.238 kb on - strandat 908.238 kb on - strandat 908.243 kb on + strandat 908.243 kb on + strandat 908.243 kb on + strandat 908.243 kb on + strandat 908.244 kb on - strandat 908.244 kb on - strandat 908.244 kb on - strandat 908.297 kb on + strandat 908.348 kb on + strandat 908.383 kb on + strandat 908.383 kb on + strandat 908.384 kb on - strandat 908.384 kb on - strandat 908.766 kb on + strand, within ABZR87_RS04355at 908.767 kb on - strand, within ABZR87_RS04355at 908.767 kb on - strand, within ABZR87_RS04355at 908.767 kb on - strand, within ABZR87_RS04355at 908.767 kb on - strand, within ABZR87_RS04355at 908.767 kb on - strand, within ABZR87_RS04355at 908.853 kb on + strand, within ABZR87_RS04355at 908.853 kb on + strand, within ABZR87_RS04355at 908.854 kb on - strand, within ABZR87_RS04355at 908.854 kb on - strand, within ABZR87_RS04355at 908.854 kb on - strand, within ABZR87_RS04355at 909.300 kb on - strand, within ABZR87_RS04355at 909.300 kb on - strand, within ABZR87_RS04355at 909.300 kb on - strand, within ABZR87_RS04355

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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906,143 + ABZR87_RS04340 0.21 +0.8
906,143 + ABZR87_RS04340 0.21 -2.1
906,143 + ABZR87_RS04340 0.21 -3.0
906,143 + ABZR87_RS04340 0.21 -1.8
906,143 + ABZR87_RS04340 0.21 +2.3
906,143 + ABZR87_RS04340 0.21 -1.8
906,144 - ABZR87_RS04340 0.21 +1.0
906,144 - ABZR87_RS04340 0.21 +2.9
906,144 - ABZR87_RS04340 0.21 +1.4
906,317 + ABZR87_RS04340 0.42 -1.3
906,317 + ABZR87_RS04340 0.42 -0.9
906,317 + ABZR87_RS04340 0.42 +1.8
906,317 + ABZR87_RS04340 0.42 -0.3
906,318 - ABZR87_RS04340 0.42 +0.6
906,318 - ABZR87_RS04340 0.42 -2.9
906,371 + ABZR87_RS04340 0.49 +0.4
906,371 + ABZR87_RS04340 0.49 +0.6
906,371 + ABZR87_RS04340 0.49 +0.7
906,371 + ABZR87_RS04340 0.49 +1.1
906,371 + ABZR87_RS04340 0.49 -2.2
906,371 + ABZR87_RS04340 0.49 -2.2
906,372 - ABZR87_RS04340 0.49 +0.8
906,372 - ABZR87_RS04340 0.49 +0.3
906,518 + ABZR87_RS04340 0.67 -2.2
906,518 + ABZR87_RS04340 0.67 -4.1
906,518 + ABZR87_RS04340 0.67 -1.6
906,518 + ABZR87_RS04340 0.67 -0.5
906,518 + ABZR87_RS04340 0.67 -2.9
906,518 + ABZR87_RS04340 0.67 -1.8
906,518 + ABZR87_RS04340 0.67 +1.8
906,519 - ABZR87_RS04340 0.67 +0.2
906,519 - ABZR87_RS04340 0.67 +2.0
906,519 - ABZR87_RS04340 0.67 +1.8
906,686 + ABZR87_RS04340 0.87 +4.1
906,686 + ABZR87_RS04340 0.87 -2.5
906,687 - ABZR87_RS04340 0.87 -1.2
906,734 + +2.8
906,735 - +0.5
906,743 + +0.2
906,743 + -3.0
906,743 + -0.9
906,743 + +2.0
906,744 - +2.0
906,744 - -3.2
906,744 - -1.0
906,744 - +0.6
906,788 + +0.6
907,136 + -1.4
907,136 + +1.2
907,137 - +2.1
907,137 - -0.5
907,137 - +0.1
907,137 - -2.8
907,137 - -1.1
907,409 + ABZR87_RS04350 0.27 +3.4
907,410 - ABZR87_RS04350 0.27 -1.0
907,410 - ABZR87_RS04350 0.27 -0.8
907,766 - ABZR87_RS04350 0.56 -0.3
907,766 - ABZR87_RS04350 0.56 +1.4
907,866 + ABZR87_RS04350 0.64 +0.5
907,867 - ABZR87_RS04350 0.64 +0.2
907,867 - ABZR87_RS04350 0.64 -0.5
907,914 - ABZR87_RS04350 0.68 -0.5
908,039 + ABZR87_RS04350 0.78 -3.4
908,040 - ABZR87_RS04350 0.78 +0.2
908,237 + -0.5
908,237 + -1.3
908,237 + -2.0
908,237 + -1.9
908,237 + +1.8
908,237 + +0.4
908,237 + -0.9
908,238 - +3.0
908,238 - -1.8
908,238 - +0.4
908,238 - +1.8
908,238 - +1.7
908,243 + -1.5
908,243 + +0.2
908,243 + +2.9
908,243 + +0.9
908,244 - +1.9
908,244 - -0.9
908,244 - -1.8
908,297 + -1.4
908,348 + +1.6
908,383 + +0.9
908,383 + +1.5
908,384 - +0.5
908,384 - +2.8
908,766 + ABZR87_RS04355 0.23 -2.5
908,767 - ABZR87_RS04355 0.23 +1.7
908,767 - ABZR87_RS04355 0.23 +0.4
908,767 - ABZR87_RS04355 0.23 -0.4
908,767 - ABZR87_RS04355 0.23 +2.6
908,767 - ABZR87_RS04355 0.23 +1.2
908,853 + ABZR87_RS04355 0.29 -0.1
908,853 + ABZR87_RS04355 0.29 +1.3
908,854 - ABZR87_RS04355 0.29 -0.3
908,854 - ABZR87_RS04355 0.29 -1.4
908,854 - ABZR87_RS04355 0.29 +3.3
909,300 - ABZR87_RS04355 0.61 +1.8
909,300 - ABZR87_RS04355 0.61 -0.7
909,300 - ABZR87_RS04355 0.61 +2.7

Or see this region's nucleotide sequence