Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02900

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02890 and ABZR87_RS02895 are separated by 10 nucleotidesABZR87_RS02895 and ABZR87_RS02900 are separated by 8 nucleotidesABZR87_RS02900 and ABZR87_RS02905 are separated by 6 nucleotides ABZR87_RS02890: ABZR87_RS02890 - DUF2135 domain-containing protein, at 599,910 to 600,752 _RS02890 ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554 _RS02895 ABZR87_RS02900: ABZR87_RS02900 - DUF2300 domain-containing protein, at 601,563 to 603,293 _RS02900 ABZR87_RS02905: ABZR87_RS02905 - alpha-2-macroglobulin, at 603,300 to 608,084 _RS02905 Position (kb) 601 602 603 604Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 600.583 kb on + strand, within ABZR87_RS02890at 600.601 kb on + strand, within ABZR87_RS02890at 600.855 kb on + strand, within ABZR87_RS02895at 600.857 kb on + strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.945 kb on - strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.286 kb on + strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.660 kb on + strandat 601.660 kb on + strandat 601.661 kb on - strandat 601.661 kb on - strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.712 kb on - strandat 601.712 kb on - strandat 601.790 kb on - strand, within ABZR87_RS02900at 601.790 kb on - strand, within ABZR87_RS02900at 602.005 kb on - strand, within ABZR87_RS02900at 602.134 kb on + strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.251 kb on + strand, within ABZR87_RS02900at 602.251 kb on + strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.431 kb on + strand, within ABZR87_RS02900at 602.896 kb on + strand, within ABZR87_RS02900at 602.959 kb on + strand, within ABZR87_RS02900at 602.959 kb on + strand, within ABZR87_RS02900at 602.959 kb on + strand, within ABZR87_RS02900at 602.959 kb on + strand, within ABZR87_RS02900at 602.959 kb on + strand, within ABZR87_RS02900at 602.960 kb on - strand, within ABZR87_RS02900at 602.960 kb on - strand, within ABZR87_RS02900at 602.960 kb on - strand, within ABZR87_RS02900at 602.960 kb on - strand, within ABZR87_RS02900at 602.960 kb on - strand, within ABZR87_RS02900at 602.992 kb on + strand, within ABZR87_RS02900at 602.992 kb on + strand, within ABZR87_RS02900at 602.993 kb on - strand, within ABZR87_RS02900at 603.025 kb on + strand, within ABZR87_RS02900at 603.025 kb on + strand, within ABZR87_RS02900at 603.025 kb on + strand, within ABZR87_RS02900at 603.025 kb on + strand, within ABZR87_RS02900at 603.026 kb on - strand, within ABZR87_RS02900at 603.031 kb on + strand, within ABZR87_RS02900at 603.031 kb on + strand, within ABZR87_RS02900at 603.031 kb on + strand, within ABZR87_RS02900at 603.031 kb on + strand, within ABZR87_RS02900at 603.032 kb on - strand, within ABZR87_RS02900at 603.163 kb on + strandat 603.164 kb on - strandat 603.164 kb on - strandat 603.164 kb on - strandat 603.319 kb on + strandat 603.320 kb on - strandat 603.367 kb on + strandat 603.367 kb on + strandat 603.367 kb on + strandat 603.368 kb on - strandat 603.379 kb on + strandat 603.379 kb on + strandat 603.379 kb on + strandat 603.379 kb on + strandat 603.475 kb on + strandat 603.476 kb on - strandat 603.476 kb on - strandat 603.496 kb on + strandat 603.496 kb on + strandat 603.497 kb on - strandat 603.634 kb on + strandat 603.634 kb on + strandat 603.634 kb on + strandat 603.634 kb on + strandat 603.635 kb on - strandat 603.635 kb on - strandat 603.635 kb on - strandat 603.635 kb on - strandat 603.635 kb on - strandat 603.673 kb on + strandat 603.673 kb on + strandat 603.674 kb on - strandat 603.723 kb on - strandat 603.818 kb on - strand, within ABZR87_RS02905

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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600,583 + ABZR87_RS02890 0.80 -2.7
600,601 + ABZR87_RS02890 0.82 -1.2
600,855 + ABZR87_RS02895 0.12 +0.1
600,857 + ABZR87_RS02895 0.12 +0.6
600,858 - ABZR87_RS02895 0.12 -0.5
600,858 - ABZR87_RS02895 0.12 +2.3
600,858 - ABZR87_RS02895 0.12 -2.7
600,858 - ABZR87_RS02895 0.12 +1.0
600,858 - ABZR87_RS02895 0.12 +0.6
600,944 + ABZR87_RS02895 0.23 -2.2
600,944 + ABZR87_RS02895 0.23 +0.5
600,945 - ABZR87_RS02895 0.23 -1.9
600,953 + ABZR87_RS02895 0.24 -1.6
600,953 + ABZR87_RS02895 0.24 +0.4
600,954 - ABZR87_RS02895 0.24 +1.2
600,954 - ABZR87_RS02895 0.24 +0.3
600,954 - ABZR87_RS02895 0.24 +0.3
600,954 - ABZR87_RS02895 0.24 -0.4
601,178 + ABZR87_RS02895 0.52 +0.9
601,178 + ABZR87_RS02895 0.52 +1.0
601,179 - ABZR87_RS02895 0.53 +1.7
601,179 - ABZR87_RS02895 0.53 +1.7
601,179 - ABZR87_RS02895 0.53 +1.7
601,286 + ABZR87_RS02895 0.66 -3.2
601,287 - ABZR87_RS02895 0.66 +1.4
601,287 - ABZR87_RS02895 0.66 +2.0
601,287 - ABZR87_RS02895 0.66 +0.6
601,287 - ABZR87_RS02895 0.66 +1.7
601,287 - ABZR87_RS02895 0.66 -0.6
601,424 + ABZR87_RS02895 0.83 -1.9
601,424 + ABZR87_RS02895 0.83 +0.1
601,424 + ABZR87_RS02895 0.83 +1.4
601,425 - ABZR87_RS02895 0.84 +1.1
601,425 - ABZR87_RS02895 0.84 -0.8
601,425 - ABZR87_RS02895 0.84 -2.5
601,425 - ABZR87_RS02895 0.84 +1.2
601,425 - ABZR87_RS02895 0.84 +0.1
601,660 + +3.3
601,660 + +2.2
601,661 - +0.6
601,661 - -0.1
601,711 + -1.2
601,711 + -0.2
601,711 + -3.3
601,712 - +0.7
601,712 - +1.2
601,790 - ABZR87_RS02900 0.13 +0.8
601,790 - ABZR87_RS02900 0.13 +1.1
602,005 - ABZR87_RS02900 0.26 -2.4
602,134 + ABZR87_RS02900 0.33 -3.3
602,171 - ABZR87_RS02900 0.35 +0.3
602,171 - ABZR87_RS02900 0.35 -2.5
602,171 - ABZR87_RS02900 0.35 +0.3
602,251 + ABZR87_RS02900 0.40 +0.1
602,251 + ABZR87_RS02900 0.40 -3.6
602,252 - ABZR87_RS02900 0.40 +1.4
602,252 - ABZR87_RS02900 0.40 +0.1
602,252 - ABZR87_RS02900 0.40 +1.4
602,431 + ABZR87_RS02900 0.50 -0.3
602,896 + ABZR87_RS02900 0.77 -0.1
602,959 + ABZR87_RS02900 0.81 -0.9
602,959 + ABZR87_RS02900 0.81 -2.3
602,959 + ABZR87_RS02900 0.81 +0.3
602,959 + ABZR87_RS02900 0.81 -2.9
602,959 + ABZR87_RS02900 0.81 -2.8
602,960 - ABZR87_RS02900 0.81 +2.3
602,960 - ABZR87_RS02900 0.81 -1.6
602,960 - ABZR87_RS02900 0.81 +1.4
602,960 - ABZR87_RS02900 0.81 -1.9
602,960 - ABZR87_RS02900 0.81 -1.2
602,992 + ABZR87_RS02900 0.83 -1.1
602,992 + ABZR87_RS02900 0.83 +0.5
602,993 - ABZR87_RS02900 0.83 +0.2
603,025 + ABZR87_RS02900 0.84 +2.1
603,025 + ABZR87_RS02900 0.84 -1.8
603,025 + ABZR87_RS02900 0.84 -1.4
603,025 + ABZR87_RS02900 0.84 +1.5
603,026 - ABZR87_RS02900 0.85 +1.4
603,031 + ABZR87_RS02900 0.85 +0.6
603,031 + ABZR87_RS02900 0.85 +1.2
603,031 + ABZR87_RS02900 0.85 +1.6
603,031 + ABZR87_RS02900 0.85 -0.3
603,032 - ABZR87_RS02900 0.85 +0.6
603,163 + +2.8
603,164 - +0.9
603,164 - -1.2
603,164 - +0.2
603,319 + +1.2
603,320 - +1.4
603,367 + +0.7
603,367 + -1.4
603,367 + +0.6
603,368 - -1.6
603,379 + +0.8
603,379 + -0.8
603,379 + -0.8
603,379 + -0.9
603,475 + -1.1
603,476 - -1.9
603,476 - +0.3
603,496 + -1.5
603,496 + +3.4
603,497 - -2.8
603,634 + +0.9
603,634 + +2.1
603,634 + +0.5
603,634 + -1.1
603,635 - +0.7
603,635 - -2.8
603,635 - +0.3
603,635 - +0.9
603,635 - +0.2
603,673 + -2.0
603,673 + -1.5
603,674 - -0.5
603,723 - +0.4
603,818 - ABZR87_RS02905 0.11 -2.9

Or see this region's nucleotide sequence