Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01505

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01495 and ABZR87_RS01500 are separated by 77 nucleotidesABZR87_RS01500 and ABZR87_RS01505 are separated by 49 nucleotidesABZR87_RS01505 and ABZR87_RS01510 are separated by 82 nucleotidesABZR87_RS01510 and ABZR87_RS01515 are separated by 56 nucleotides ABZR87_RS01495: ABZR87_RS01495 - transcriptional regulator GcvA, at 314,889 to 315,815 _RS01495 ABZR87_RS01500: ABZR87_RS01500 - glyoxalase/bleomycin resistance/extradiol dioxygenase family protein, at 315,893 to 316,312 _RS01500 ABZR87_RS01505: ABZR87_RS01505 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 316,362 to 317,111 _RS01505 ABZR87_RS01510: ABZR87_RS01510 - YidB family protein, at 317,194 to 317,793 _RS01510 ABZR87_RS01515: ABZR87_RS01515 - LysR family transcriptional regulator, at 317,850 to 318,794 _RS01515 Position (kb) 316 317 318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 315.520 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.684 kb on + strand, within ABZR87_RS01495at 315.684 kb on + strand, within ABZR87_RS01495at 315.685 kb on - strand, within ABZR87_RS01495at 315.688 kb on - strand, within ABZR87_RS01495at 315.688 kb on - strand, within ABZR87_RS01495at 315.847 kb on + strandat 315.848 kb on - strandat 315.848 kb on - strandat 315.848 kb on - strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.974 kb on + strand, within ABZR87_RS01500at 315.974 kb on + strand, within ABZR87_RS01500at 315.975 kb on - strand, within ABZR87_RS01500at 315.975 kb on - strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.050 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.178 kb on + strand, within ABZR87_RS01500at 316.179 kb on - strand, within ABZR87_RS01500at 316.179 kb on - strand, within ABZR87_RS01500at 316.274 kb on + strandat 316.360 kb on + strandat 316.361 kb on - strandat 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.670 kb on - strand, within ABZR87_RS01505at 317.020 kb on + strand, within ABZR87_RS01505at 317.020 kb on + strand, within ABZR87_RS01505at 317.021 kb on - strand, within ABZR87_RS01505at 317.042 kb on + strandat 317.043 kb on - strandat 317.043 kb on - strandat 317.109 kb on + strandat 317.110 kb on - strandat 317.201 kb on + strandat 317.202 kb on - strandat 317.202 kb on - strandat 317.202 kb on - strandat 317.299 kb on + strand, within ABZR87_RS01510at 317.300 kb on - strand, within ABZR87_RS01510at 317.300 kb on - strand, within ABZR87_RS01510at 317.863 kb on + strandat 317.864 kb on - strandat 317.898 kb on + strandat 317.898 kb on + strandat 317.898 kb on + strandat 317.899 kb on - strandat 317.899 kb on - strandat 317.899 kb on - strandat 317.899 kb on - strandat 317.899 kb on - strandat 317.899 kb on - strandat 318.002 kb on - strand, within ABZR87_RS01515at 318.010 kb on + strand, within ABZR87_RS01515at 318.011 kb on - strand, within ABZR87_RS01515at 318.011 kb on - strand, within ABZR87_RS01515at 318.013 kb on + strand, within ABZR87_RS01515at 318.013 kb on + strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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315,520 + ABZR87_RS01495 0.68 +0.7
315,621 + ABZR87_RS01495 0.79 -1.2
315,621 + ABZR87_RS01495 0.79 +0.4
315,621 + ABZR87_RS01495 0.79 -1.8
315,621 + ABZR87_RS01495 0.79 +3.0
315,622 - ABZR87_RS01495 0.79 +2.2
315,622 - ABZR87_RS01495 0.79 -0.9
315,622 - ABZR87_RS01495 0.79 +0.8
315,684 + ABZR87_RS01495 0.86 -1.6
315,684 + ABZR87_RS01495 0.86 -2.5
315,685 - ABZR87_RS01495 0.86 -1.8
315,688 - ABZR87_RS01495 0.86 +1.6
315,688 - ABZR87_RS01495 0.86 -0.4
315,847 + +0.3
315,848 - -0.2
315,848 - +0.1
315,848 - +0.5
315,852 + -1.7
315,852 + -0.5
315,852 + -0.7
315,852 + +1.6
315,852 + +1.2
315,853 - -0.5
315,853 - -3.7
315,853 - +0.8
315,853 - -2.1
315,853 - -3.1
315,974 + ABZR87_RS01500 0.19 +0.0
315,974 + ABZR87_RS01500 0.19 -2.9
315,975 - ABZR87_RS01500 0.20 +1.3
315,975 - ABZR87_RS01500 0.20 +1.0
316,049 + ABZR87_RS01500 0.37 +1.8
316,049 + ABZR87_RS01500 0.37 -3.1
316,049 + ABZR87_RS01500 0.37 -0.8
316,050 - ABZR87_RS01500 0.37 -2.6
316,155 - ABZR87_RS01500 0.62 +0.7
316,155 - ABZR87_RS01500 0.62 +0.7
316,155 - ABZR87_RS01500 0.62 +0.9
316,178 + ABZR87_RS01500 0.68 -3.0
316,179 - ABZR87_RS01500 0.68 -1.1
316,179 - ABZR87_RS01500 0.68 -1.8
316,274 + -0.0
316,360 + +0.9
316,361 - -0.5
316,669 + ABZR87_RS01505 0.41 +1.9
316,669 + ABZR87_RS01505 0.41 +3.9
316,669 + ABZR87_RS01505 0.41 +0.4
316,669 + ABZR87_RS01505 0.41 +4.9
316,669 + ABZR87_RS01505 0.41 +3.1
316,670 - ABZR87_RS01505 0.41 +3.6
317,020 + ABZR87_RS01505 0.88 +1.7
317,020 + ABZR87_RS01505 0.88 +1.5
317,021 - ABZR87_RS01505 0.88 +2.7
317,042 + -1.1
317,043 - +2.8
317,043 - -0.9
317,109 + -1.1
317,110 - +0.9
317,201 + -1.5
317,202 - +1.4
317,202 - +0.3
317,202 - +3.0
317,299 + ABZR87_RS01510 0.17 -0.0
317,300 - ABZR87_RS01510 0.18 +0.4
317,300 - ABZR87_RS01510 0.18 +2.5
317,863 + +1.6
317,864 - +0.5
317,898 + +1.6
317,898 + -0.4
317,898 + +1.6
317,899 - +2.6
317,899 - +2.1
317,899 - -2.6
317,899 - -1.6
317,899 - -2.7
317,899 - +2.1
318,002 - ABZR87_RS01515 0.16 -1.0
318,010 + ABZR87_RS01515 0.17 -2.5
318,011 - ABZR87_RS01515 0.17 -0.7
318,011 - ABZR87_RS01515 0.17 -1.8
318,013 + ABZR87_RS01515 0.17 -0.4
318,013 + ABZR87_RS01515 0.17 +0.8
318,014 - ABZR87_RS01515 0.17 -0.1
318,014 - ABZR87_RS01515 0.17 +2.1
318,014 - ABZR87_RS01515 0.17 +2.0

Or see this region's nucleotide sequence