Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01105

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01095 and ABZR87_RS01100 are separated by 5 nucleotidesABZR87_RS01100 and ABZR87_RS01105 are separated by 30 nucleotidesABZR87_RS01105 and ABZR87_RS01110 are separated by 389 nucleotides ABZR87_RS01095: ABZR87_RS01095 - YhdP family protein, at 223,133 to 227,422 _RS01095 ABZR87_RS01100: ABZR87_RS01100 - carbon-nitrogen hydrolase family protein, at 227,428 to 228,297 _RS01100 ABZR87_RS01105: ABZR87_RS01105 - metalloprotease TldD, at 228,328 to 229,791 _RS01105 ABZR87_RS01110: ABZR87_RS01110 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 230,181 to 231,260 _RS01110 Position (kb) 228 229 230Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 227.330 kb on + strandat 227.331 kb on - strandat 227.331 kb on - strandat 227.387 kb on - strandat 227.387 kb on - strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.614 kb on + strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.782 kb on - strand, within ABZR87_RS01100at 227.782 kb on - strand, within ABZR87_RS01100at 227.824 kb on + strand, within ABZR87_RS01100at 227.824 kb on + strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.869 kb on + strand, within ABZR87_RS01100at 227.869 kb on + strand, within ABZR87_RS01100at 227.870 kb on - strand, within ABZR87_RS01100at 227.870 kb on - strand, within ABZR87_RS01100at 227.953 kb on + strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.454 kb on + strandat 228.454 kb on + strandat 228.454 kb on + strandat 228.454 kb on + strandat 228.454 kb on + strandat 228.455 kb on - strandat 228.466 kb on + strandat 228.466 kb on + strandat 228.467 kb on - strandat 228.475 kb on + strand, within ABZR87_RS01105at 228.476 kb on - strand, within ABZR87_RS01105at 228.476 kb on - strand, within ABZR87_RS01105at 228.476 kb on - strand, within ABZR87_RS01105at 228.476 kb on - strand, within ABZR87_RS01105at 228.476 kb on - strand, within ABZR87_RS01105at 228.718 kb on + strand, within ABZR87_RS01105at 228.718 kb on + strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.719 kb on - strand, within ABZR87_RS01105at 228.847 kb on + strand, within ABZR87_RS01105at 228.847 kb on + strand, within ABZR87_RS01105at 228.848 kb on - strand, within ABZR87_RS01105at 228.982 kb on + strand, within ABZR87_RS01105at 228.982 kb on + strand, within ABZR87_RS01105at 228.988 kb on + strand, within ABZR87_RS01105at 228.988 kb on + strand, within ABZR87_RS01105at 228.988 kb on + strand, within ABZR87_RS01105at 228.995 kb on - strand, within ABZR87_RS01105at 228.995 kb on - strand, within ABZR87_RS01105at 228.995 kb on - strand, within ABZR87_RS01105at 228.995 kb on - strand, within ABZR87_RS01105at 229.021 kb on + strand, within ABZR87_RS01105at 229.021 kb on + strand, within ABZR87_RS01105at 229.021 kb on + strand, within ABZR87_RS01105at 229.021 kb on + strand, within ABZR87_RS01105at 229.022 kb on - strand, within ABZR87_RS01105at 229.022 kb on - strand, within ABZR87_RS01105at 229.022 kb on - strand, within ABZR87_RS01105at 229.339 kb on + strand, within ABZR87_RS01105at 229.339 kb on + strand, within ABZR87_RS01105at 229.340 kb on - strand, within ABZR87_RS01105at 229.408 kb on + strand, within ABZR87_RS01105at 229.408 kb on + strand, within ABZR87_RS01105at 229.409 kb on - strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.444 kb on + strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.445 kb on - strand, within ABZR87_RS01105at 229.504 kb on + strand, within ABZR87_RS01105at 229.504 kb on + strand, within ABZR87_RS01105at 229.504 kb on + strand, within ABZR87_RS01105at 229.504 kb on + strand, within ABZR87_RS01105at 229.505 kb on - strand, within ABZR87_RS01105at 229.505 kb on - strand, within ABZR87_RS01105at 229.505 kb on - strand, within ABZR87_RS01105at 229.505 kb on - strand, within ABZR87_RS01105at 229.576 kb on + strand, within ABZR87_RS01105at 229.576 kb on + strand, within ABZR87_RS01105at 229.577 kb on - strand, within ABZR87_RS01105at 229.863 kb on + strandat 229.863 kb on + strandat 229.863 kb on + strandat 229.864 kb on - strandat 229.864 kb on - strandat 229.865 kb on + strandat 229.865 kb on + strandat 229.865 kb on + strandat 229.865 kb on + strandat 229.866 kb on - strandat 229.866 kb on - strandat 229.866 kb on - strandat 229.866 kb on - strandat 229.866 kb on - strandat 229.894 kb on - strandat 229.894 kb on - strandat 229.977 kb on - strandat 229.977 kb on - strandat 230.031 kb on - strandat 230.137 kb on + strandat 230.137 kb on + strandat 230.137 kb on + strandat 230.138 kb on - strandat 230.138 kb on - strandat 230.138 kb on - strandat 230.138 kb on - strandat 230.138 kb on - strandat 230.151 kb on - strandat 230.151 kb on - strandat 230.151 kb on - strandat 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.289 kb on + strand, within ABZR87_RS01110at 230.290 kb on - strand, within ABZR87_RS01110at 230.290 kb on - strand, within ABZR87_RS01110at 230.395 kb on - strand, within ABZR87_RS01110at 230.460 kb on + strand, within ABZR87_RS01110at 230.460 kb on + strand, within ABZR87_RS01110at 230.460 kb on + strand, within ABZR87_RS01110at 230.610 kb on + strand, within ABZR87_RS01110at 230.610 kb on + strand, within ABZR87_RS01110at 230.634 kb on + strand, within ABZR87_RS01110at 230.634 kb on + strand, within ABZR87_RS01110at 230.634 kb on + strand, within ABZR87_RS01110at 230.635 kb on - strand, within ABZR87_RS01110

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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227,330 + -1.3
227,331 - +3.2
227,331 - -0.9
227,387 - -2.4
227,387 - +0.3
227,420 + -2.1
227,420 + -1.1
227,421 - -1.1
227,421 - +0.2
227,614 + ABZR87_RS01100 0.21 +0.2
227,615 - ABZR87_RS01100 0.21 +0.8
227,615 - ABZR87_RS01100 0.21 -2.1
227,615 - ABZR87_RS01100 0.21 -1.3
227,782 - ABZR87_RS01100 0.41 +1.4
227,782 - ABZR87_RS01100 0.41 -2.5
227,824 + ABZR87_RS01100 0.46 -2.2
227,824 + ABZR87_RS01100 0.46 +0.7
227,825 - ABZR87_RS01100 0.46 +1.0
227,825 - ABZR87_RS01100 0.46 +2.5
227,825 - ABZR87_RS01100 0.46 -1.3
227,869 + ABZR87_RS01100 0.51 +1.2
227,869 + ABZR87_RS01100 0.51 +0.1
227,870 - ABZR87_RS01100 0.51 +2.0
227,870 - ABZR87_RS01100 0.51 +0.7
227,953 + ABZR87_RS01100 0.60 -0.6
227,954 - ABZR87_RS01100 0.60 -3.4
227,954 - ABZR87_RS01100 0.60 -3.2
227,954 - ABZR87_RS01100 0.60 -1.7
227,954 - ABZR87_RS01100 0.60 -4.6
227,954 - ABZR87_RS01100 0.60 -0.6
228,037 + ABZR87_RS01100 0.70 +2.7
228,037 + ABZR87_RS01100 0.70 -3.2
228,037 + ABZR87_RS01100 0.70 -2.5
228,037 + ABZR87_RS01100 0.70 +1.9
228,037 + ABZR87_RS01100 0.70 -2.6
228,037 + ABZR87_RS01100 0.70 +0.3
228,037 + ABZR87_RS01100 0.70 -4.8
228,037 + ABZR87_RS01100 0.70 +0.1
228,037 + ABZR87_RS01100 0.70 +2.4
228,037 + ABZR87_RS01100 0.70 +1.2
228,038 - ABZR87_RS01100 0.70 -2.7
228,038 - ABZR87_RS01100 0.70 -1.9
228,038 - ABZR87_RS01100 0.70 -0.2
228,038 - ABZR87_RS01100 0.70 -0.3
228,038 - ABZR87_RS01100 0.70 +1.0
228,100 + ABZR87_RS01100 0.77 -3.7
228,100 + ABZR87_RS01100 0.77 -2.1
228,100 + ABZR87_RS01100 0.77 -1.1
228,100 + ABZR87_RS01100 0.77 -0.9
228,100 + ABZR87_RS01100 0.77 -2.0
228,100 + ABZR87_RS01100 0.77 +0.2
228,100 + ABZR87_RS01100 0.77 -2.1
228,100 + ABZR87_RS01100 0.77 -2.0
228,100 + ABZR87_RS01100 0.77 +1.9
228,100 + ABZR87_RS01100 0.77 -3.3
228,100 + ABZR87_RS01100 0.77 -0.2
228,100 + ABZR87_RS01100 0.77 -1.7
228,101 - ABZR87_RS01100 0.77 -0.9
228,101 - ABZR87_RS01100 0.77 -0.5
228,101 - ABZR87_RS01100 0.77 +1.0
228,101 - ABZR87_RS01100 0.77 -2.2
228,101 - ABZR87_RS01100 0.77 -2.6
228,101 - ABZR87_RS01100 0.77 +2.2
228,101 - ABZR87_RS01100 0.77 -2.1
228,101 - ABZR87_RS01100 0.77 +0.6
228,101 - ABZR87_RS01100 0.77 +0.7
228,101 - ABZR87_RS01100 0.77 +1.1
228,295 + -2.2
228,295 + +1.2
228,295 + +0.5
228,295 + +0.1
228,295 + +1.1
228,295 + -0.4
228,295 + -1.1
228,295 + +1.2
228,296 - +1.7
228,296 - -2.5
228,296 - -0.2
228,296 - +0.2
228,296 - -0.1
228,296 - -1.7
228,296 - -0.5
228,296 - +0.5
228,296 - +0.7
228,296 - +0.5
228,296 - +0.0
228,454 + +1.6
228,454 + +0.6
228,454 + -0.8
228,454 + -0.6
228,454 + -2.3
228,455 - +2.1
228,466 + -2.1
228,466 + +2.4
228,467 - -1.0
228,475 + ABZR87_RS01105 0.10 +0.2
228,476 - ABZR87_RS01105 0.10 -2.1
228,476 - ABZR87_RS01105 0.10 -3.5
228,476 - ABZR87_RS01105 0.10 -4.0
228,476 - ABZR87_RS01105 0.10 -1.2
228,476 - ABZR87_RS01105 0.10 +1.7
228,718 + ABZR87_RS01105 0.27 -2.0
228,718 + ABZR87_RS01105 0.27 -2.6
228,719 - ABZR87_RS01105 0.27 -2.2
228,719 - ABZR87_RS01105 0.27 -0.8
228,719 - ABZR87_RS01105 0.27 -1.1
228,719 - ABZR87_RS01105 0.27 -1.3
228,719 - ABZR87_RS01105 0.27 -3.0
228,719 - ABZR87_RS01105 0.27 +0.1
228,719 - ABZR87_RS01105 0.27 +0.6
228,847 + ABZR87_RS01105 0.35 -2.7
228,847 + ABZR87_RS01105 0.35 -1.1
228,848 - ABZR87_RS01105 0.36 -0.1
228,982 + ABZR87_RS01105 0.45 -2.8
228,982 + ABZR87_RS01105 0.45 -1.6
228,988 + ABZR87_RS01105 0.45 +0.5
228,988 + ABZR87_RS01105 0.45 -1.3
228,988 + ABZR87_RS01105 0.45 -1.0
228,995 - ABZR87_RS01105 0.46 -0.3
228,995 - ABZR87_RS01105 0.46 +1.0
228,995 - ABZR87_RS01105 0.46 -2.1
228,995 - ABZR87_RS01105 0.46 +0.2
229,021 + ABZR87_RS01105 0.47 -1.8
229,021 + ABZR87_RS01105 0.47 -0.6
229,021 + ABZR87_RS01105 0.47 -0.4
229,021 + ABZR87_RS01105 0.47 -3.1
229,022 - ABZR87_RS01105 0.47 +2.7
229,022 - ABZR87_RS01105 0.47 -0.4
229,022 - ABZR87_RS01105 0.47 -3.0
229,339 + ABZR87_RS01105 0.69 -1.1
229,339 + ABZR87_RS01105 0.69 +1.7
229,340 - ABZR87_RS01105 0.69 +1.4
229,408 + ABZR87_RS01105 0.74 +0.2
229,408 + ABZR87_RS01105 0.74 -0.3
229,409 - ABZR87_RS01105 0.74 -0.1
229,444 + ABZR87_RS01105 0.76 -1.8
229,444 + ABZR87_RS01105 0.76 -1.3
229,444 + ABZR87_RS01105 0.76 +0.2
229,444 + ABZR87_RS01105 0.76 +0.0
229,444 + ABZR87_RS01105 0.76 -2.3
229,444 + ABZR87_RS01105 0.76 +0.2
229,444 + ABZR87_RS01105 0.76 -1.1
229,444 + ABZR87_RS01105 0.76 -2.8
229,444 + ABZR87_RS01105 0.76 -1.3
229,444 + ABZR87_RS01105 0.76 -3.0
229,445 - ABZR87_RS01105 0.76 +1.7
229,445 - ABZR87_RS01105 0.76 -0.8
229,445 - ABZR87_RS01105 0.76 +1.2
229,445 - ABZR87_RS01105 0.76 -1.0
229,445 - ABZR87_RS01105 0.76 +0.6
229,445 - ABZR87_RS01105 0.76 -0.3
229,504 + ABZR87_RS01105 0.80 +0.2
229,504 + ABZR87_RS01105 0.80 -3.1
229,504 + ABZR87_RS01105 0.80 -0.6
229,504 + ABZR87_RS01105 0.80 -1.0
229,505 - ABZR87_RS01105 0.80 +3.1
229,505 - ABZR87_RS01105 0.80 +0.6
229,505 - ABZR87_RS01105 0.80 -1.0
229,505 - ABZR87_RS01105 0.80 +0.2
229,576 + ABZR87_RS01105 0.85 -3.3
229,576 + ABZR87_RS01105 0.85 -2.1
229,577 - ABZR87_RS01105 0.85 -3.0
229,863 + -0.2
229,863 + -3.8
229,863 + -0.6
229,864 - -1.2
229,864 - -2.8
229,865 + -0.2
229,865 + -1.6
229,865 + -1.1
229,865 + +1.8
229,866 - -2.5
229,866 - -1.9
229,866 - -2.9
229,866 - -2.7
229,866 - -2.9
229,894 - -3.3
229,894 - -3.5
229,977 - -3.8
229,977 - +0.2
230,031 - -3.6
230,137 + +2.0
230,137 + -0.8
230,137 + -1.7
230,138 - -3.5
230,138 - -1.6
230,138 - -2.6
230,138 - -2.3
230,138 - -2.7
230,151 - -1.3
230,151 - -3.0
230,151 - -2.8
230,289 + ABZR87_RS01110 0.10 -3.1
230,289 + ABZR87_RS01110 0.10 -2.0
230,289 + ABZR87_RS01110 0.10 -1.7
230,289 + ABZR87_RS01110 0.10 -3.8
230,289 + ABZR87_RS01110 0.10 -1.6
230,289 + ABZR87_RS01110 0.10 -2.5
230,289 + ABZR87_RS01110 0.10 -3.5
230,290 - ABZR87_RS01110 0.10 -2.1
230,290 - ABZR87_RS01110 0.10 -3.1
230,395 - ABZR87_RS01110 0.20 -2.7
230,460 + ABZR87_RS01110 0.26 -2.0
230,460 + ABZR87_RS01110 0.26 -1.3
230,460 + ABZR87_RS01110 0.26 -2.3
230,610 + ABZR87_RS01110 0.40 -2.8
230,610 + ABZR87_RS01110 0.40 +3.3
230,634 + ABZR87_RS01110 0.42 -1.1
230,634 + ABZR87_RS01110 0.42 -1.8
230,634 + ABZR87_RS01110 0.42 -0.9
230,635 - ABZR87_RS01110 0.42 -2.7

Or see this region's nucleotide sequence