Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01055

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01050 and ABZR87_RS01055 are separated by 125 nucleotidesABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotides ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711 _RS01050 ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 Position (kb) 210 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.154 kb on - strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.296 kb on - strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.596 kb on + strand, within ABZR87_RS01050at 210.806 kb on + strandat 210.806 kb on + strandat 210.806 kb on + strandat 210.806 kb on + strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.841 kb on + strandat 210.841 kb on + strandat 210.841 kb on + strandat 210.841 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.878 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.964 kb on + strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 211.053 kb on + strand, within ABZR87_RS01055at 211.054 kb on - strand, within ABZR87_RS01055at 211.115 kb on + strand, within ABZR87_RS01055at 211.116 kb on - strand, within ABZR87_RS01055at 211.118 kb on - strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.670 kb on + strand, within ABZR87_RS01055at 211.804 kb on + strandat 211.804 kb on + strandat 211.805 kb on - strandat 211.848 kb on - strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.851 kb on - strandat 211.984 kb on + strandat 211.985 kb on - strandat 211.985 kb on - strandat 211.987 kb on - strandat 211.988 kb on + strandat 211.991 kb on - strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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209,864 + ABZR87_RS01050 0.20 +0.1
209,864 + ABZR87_RS01050 0.20 +2.0
209,864 + ABZR87_RS01050 0.20 +1.8
209,865 - ABZR87_RS01050 0.20 -2.1
209,865 - ABZR87_RS01050 0.20 -3.8
209,865 - ABZR87_RS01050 0.20 -1.8
209,865 - ABZR87_RS01050 0.20 -1.7
209,865 - ABZR87_RS01050 0.20 +0.7
209,865 - ABZR87_RS01050 0.20 +0.5
209,865 - ABZR87_RS01050 0.20 +1.6
209,865 - ABZR87_RS01050 0.20 +0.6
209,969 + ABZR87_RS01050 0.30 +0.3
209,969 + ABZR87_RS01050 0.30 -0.4
209,969 + ABZR87_RS01050 0.30 -2.4
210,153 + ABZR87_RS01050 0.48 -1.7
210,153 + ABZR87_RS01050 0.48 +0.5
210,154 - ABZR87_RS01050 0.48 -0.8
210,290 + ABZR87_RS01050 0.60 +1.8
210,290 + ABZR87_RS01050 0.60 -3.0
210,290 + ABZR87_RS01050 0.60 +1.0
210,290 + ABZR87_RS01050 0.60 -0.3
210,290 + ABZR87_RS01050 0.60 -0.3
210,290 + ABZR87_RS01050 0.60 -2.4
210,290 + ABZR87_RS01050 0.60 +0.5
210,290 + ABZR87_RS01050 0.60 -2.4
210,290 + ABZR87_RS01050 0.60 -1.9
210,291 - ABZR87_RS01050 0.60 -0.7
210,291 - ABZR87_RS01050 0.60 +2.1
210,291 - ABZR87_RS01050 0.60 +0.9
210,291 - ABZR87_RS01050 0.60 +0.5
210,291 - ABZR87_RS01050 0.60 -1.2
210,291 - ABZR87_RS01050 0.60 +2.8
210,291 - ABZR87_RS01050 0.60 +0.2
210,291 - ABZR87_RS01050 0.60 +0.9
210,291 - ABZR87_RS01050 0.60 +0.6
210,291 - ABZR87_RS01050 0.60 -0.0
210,291 - ABZR87_RS01050 0.60 -1.1
210,291 - ABZR87_RS01050 0.60 -2.4
210,296 - ABZR87_RS01050 0.61 -0.2
210,528 + ABZR87_RS01050 0.83 -2.8
210,528 + ABZR87_RS01050 0.83 -0.7
210,528 + ABZR87_RS01050 0.83 -3.0
210,528 + ABZR87_RS01050 0.83 +0.7
210,529 - ABZR87_RS01050 0.83 +0.2
210,529 - ABZR87_RS01050 0.83 +0.1
210,529 - ABZR87_RS01050 0.83 -0.2
210,530 + ABZR87_RS01050 0.83 +2.3
210,530 + ABZR87_RS01050 0.83 -1.9
210,596 + ABZR87_RS01050 0.89 -3.0
210,806 + -2.0
210,806 + +1.1
210,806 + -1.5
210,806 + -0.3
210,807 - +0.2
210,807 - -0.0
210,807 - -1.5
210,807 - +1.4
210,841 + -0.9
210,841 + -0.3
210,841 + +0.8
210,841 - -0.1
210,842 - -3.7
210,842 - -2.5
210,842 - +3.5
210,842 - +1.2
210,842 - -0.7
210,842 - -2.7
210,878 + -1.7
210,904 + -2.5
210,904 + -1.9
210,904 + -3.6
210,904 + -2.9
210,904 + -4.4
210,904 + -4.4
210,905 - -0.9
210,905 - -2.2
210,905 - -2.4
210,905 - -1.7
210,905 - -2.1
210,905 - -3.5
210,905 - -0.6
210,905 - -1.6
210,964 + ABZR87_RS01055 0.12 -1.1
210,965 - ABZR87_RS01055 0.12 -2.6
210,965 - ABZR87_RS01055 0.12 -0.3
210,965 - ABZR87_RS01055 0.12 -1.7
210,965 - ABZR87_RS01055 0.12 -4.1
211,053 + ABZR87_RS01055 0.20 -1.9
211,054 - ABZR87_RS01055 0.20 -1.7
211,115 + ABZR87_RS01055 0.26 +0.1
211,116 - ABZR87_RS01055 0.26 -1.4
211,118 - ABZR87_RS01055 0.27 -0.4
211,321 + ABZR87_RS01055 0.46 -2.6
211,321 + ABZR87_RS01055 0.46 -2.3
211,321 + ABZR87_RS01055 0.46 -2.0
211,321 + ABZR87_RS01055 0.46 -2.9
211,322 - ABZR87_RS01055 0.46 +2.2
211,322 - ABZR87_RS01055 0.46 -1.0
211,322 - ABZR87_RS01055 0.46 -0.8
211,322 - ABZR87_RS01055 0.46 -2.1
211,322 - ABZR87_RS01055 0.46 -2.8
211,322 - ABZR87_RS01055 0.46 -1.6
211,322 - ABZR87_RS01055 0.46 -2.5
211,322 - ABZR87_RS01055 0.46 -2.6
211,322 - ABZR87_RS01055 0.46 -2.5
211,322 - ABZR87_RS01055 0.46 -3.5
211,322 - ABZR87_RS01055 0.46 -2.8
211,322 - ABZR87_RS01055 0.46 -2.7
211,325 + ABZR87_RS01055 0.46 -3.3
211,325 + ABZR87_RS01055 0.46 -0.2
211,355 - ABZR87_RS01055 0.49 -2.1
211,355 - ABZR87_RS01055 0.49 -0.5
211,355 - ABZR87_RS01055 0.49 +1.2
211,670 + ABZR87_RS01055 0.79 -3.7
211,804 + -1.7
211,804 + -3.1
211,805 - -0.7
211,848 - -2.7
211,849 + -2.5
211,849 + -0.9
211,849 + -2.1
211,849 + -1.7
211,849 + -0.9
211,850 - -3.6
211,850 - +0.2
211,850 - -3.2
211,850 - -1.3
211,851 - -2.2
211,984 + -0.4
211,985 - -2.9
211,985 - +0.6
211,987 - -3.1
211,988 + -3.2
211,991 - +1.1
211,997 + -0.5
211,997 + +0.9
211,997 + -4.7
211,997 + +1.0

Or see this region's nucleotide sequence