Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00960

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotidesABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotidesABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521 _RS00950 ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 Position (kb) 190 191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 190.220 kb on + strandat 190.220 kb on + strandat 190.221 kb on - strandat 190.221 kb on - strandat 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.513 kb on + strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.532 kb on + strand, within ABZR87_RS00960at 190.550 kb on - strand, within ABZR87_RS00960at 190.880 kb on + strandat 190.880 kb on + strandat 190.880 kb on + strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.934 kb on - strandat 190.945 kb on + strandat 190.946 kb on - strandat 190.946 kb on - strandat 190.946 kb on - strandat 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.335 kb on + strand, within ABZR87_RS00965at 191.365 kb on + strand, within ABZR87_RS00965at 191.366 kb on - strand, within ABZR87_RS00965at 191.598 kb on - strand, within ABZR87_RS00965at 191.598 kb on - strand, within ABZR87_RS00965at 191.774 kb on + strand, within ABZR87_RS00965at 191.774 kb on + strand, within ABZR87_RS00965at 191.775 kb on - strand, within ABZR87_RS00965at 191.775 kb on - strand, within ABZR87_RS00965

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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189,674 + ABZR87_RS00955 0.20 -1.3
189,674 + ABZR87_RS00955 0.20 -0.9
189,674 + ABZR87_RS00955 0.20 -1.1
189,675 - ABZR87_RS00955 0.20 -2.0
189,675 - ABZR87_RS00955 0.20 -0.4
189,773 + ABZR87_RS00955 0.34 -0.7
189,773 + ABZR87_RS00955 0.34 -0.1
189,773 + ABZR87_RS00955 0.34 +3.1
189,773 + ABZR87_RS00955 0.34 +1.2
189,773 + ABZR87_RS00955 0.34 -0.6
189,773 + ABZR87_RS00955 0.34 -2.0
189,773 + ABZR87_RS00955 0.34 -2.6
189,774 - ABZR87_RS00955 0.34 +2.6
189,774 - ABZR87_RS00955 0.34 -1.6
189,774 - ABZR87_RS00955 0.34 -1.3
190,220 + +0.6
190,220 + +0.8
190,221 - +0.9
190,221 - -0.5
190,495 + ABZR87_RS00960 0.37 +1.4
190,495 + ABZR87_RS00960 0.37 -0.3
190,495 + ABZR87_RS00960 0.37 +0.2
190,495 + ABZR87_RS00960 0.37 +0.2
190,495 + ABZR87_RS00960 0.37 -1.4
190,495 + ABZR87_RS00960 0.37 +2.4
190,495 + ABZR87_RS00960 0.37 -0.6
190,495 + ABZR87_RS00960 0.37 +0.2
190,495 + ABZR87_RS00960 0.37 -0.3
190,495 + ABZR87_RS00960 0.37 -2.6
190,495 + ABZR87_RS00960 0.37 +2.7
190,496 - ABZR87_RS00960 0.37 +2.1
190,496 - ABZR87_RS00960 0.37 +0.7
190,496 - ABZR87_RS00960 0.37 +1.5
190,496 - ABZR87_RS00960 0.37 -0.3
190,496 - ABZR87_RS00960 0.37 -2.5
190,496 - ABZR87_RS00960 0.37 -1.2
190,513 + ABZR87_RS00960 0.39 +1.3
190,514 - ABZR87_RS00960 0.40 -3.2
190,514 - ABZR87_RS00960 0.40 -1.7
190,514 - ABZR87_RS00960 0.40 -0.8
190,514 - ABZR87_RS00960 0.40 +0.4
190,532 + ABZR87_RS00960 0.42 +0.4
190,550 - ABZR87_RS00960 0.45 +1.2
190,880 + +1.6
190,880 + -0.1
190,880 + +2.3
190,881 - +2.2
190,881 - -0.4
190,881 - -3.4
190,881 - +1.5
190,934 - -2.9
190,945 + -1.6
190,946 - -1.8
190,946 - -2.2
190,946 - -4.2
191,210 + ABZR87_RS00965 0.17 +0.5
191,210 + ABZR87_RS00965 0.17 -3.7
191,210 + ABZR87_RS00965 0.17 +2.2
191,210 + ABZR87_RS00965 0.17 -2.4
191,211 - ABZR87_RS00965 0.17 -1.3
191,211 - ABZR87_RS00965 0.17 -1.9
191,211 - ABZR87_RS00965 0.17 -0.6
191,211 - ABZR87_RS00965 0.17 -2.0
191,335 + ABZR87_RS00965 0.24 -1.4
191,365 + ABZR87_RS00965 0.26 +1.0
191,366 - ABZR87_RS00965 0.26 -3.9
191,598 - ABZR87_RS00965 0.38 -2.1
191,598 - ABZR87_RS00965 0.38 -3.0
191,774 + ABZR87_RS00965 0.47 -4.5
191,774 + ABZR87_RS00965 0.47 -2.1
191,775 - ABZR87_RS00965 0.47 -3.5
191,775 - ABZR87_RS00965 0.47 -2.5

Or see this region's nucleotide sequence