Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00025

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotidesABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotidesABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotidesABZR87_RS00030 and ABZR87_RS00035 are separated by 48 nucleotides ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104 _RS00030 ABZR87_RS00035: ABZR87_RS00035 - ParA family protein, at 9,153 to 9,818 _RS00035 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 6.464 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.670 kb on + strand, within ABZR87_RS00015at 6.740 kb on - strandat 6.740 kb on - strandat 6.811 kb on + strandat 6.812 kb on - strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.919 kb on - strandat 6.919 kb on - strandat 6.928 kb on + strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.965 kb on + strandat 6.965 kb on + strandat 6.966 kb on - strandat 7.031 kb on + strandat 7.036 kb on + strandat 7.036 kb on + strandat 7.037 kb on - strandat 7.097 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strandat 8.199 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.243 kb on + strandat 8.243 kb on + strandat 8.252 kb on + strandat 8.252 kb on + strandat 9.171 kb on - strandat 9.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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6,464 + ABZR87_RS00015 0.77 -2.9
6,494 + ABZR87_RS00015 0.79 +2.5
6,494 + ABZR87_RS00015 0.79 +2.3
6,577 + ABZR87_RS00015 0.84 +3.5
6,577 + ABZR87_RS00015 0.84 +1.1
6,578 - ABZR87_RS00015 0.84 +1.2
6,578 - ABZR87_RS00015 0.84 +2.4
6,631 + ABZR87_RS00015 0.87 +0.7
6,631 + ABZR87_RS00015 0.87 +0.4
6,631 + ABZR87_RS00015 0.87 -0.9
6,631 + ABZR87_RS00015 0.87 +2.0
6,631 + ABZR87_RS00015 0.87 -1.1
6,632 - ABZR87_RS00015 0.87 +1.4
6,632 - ABZR87_RS00015 0.87 +1.4
6,632 - ABZR87_RS00015 0.87 +1.4
6,632 - ABZR87_RS00015 0.87 -2.7
6,632 - ABZR87_RS00015 0.87 +1.8
6,632 - ABZR87_RS00015 0.87 +2.0
6,632 - ABZR87_RS00015 0.87 +1.0
6,670 + ABZR87_RS00015 0.89 -1.3
6,740 - +1.5
6,740 - -1.9
6,811 + +2.9
6,812 - -2.2
6,918 + +2.2
6,918 + +1.5
6,918 + +1.7
6,918 + +3.3
6,919 - -2.6
6,919 - -0.7
6,928 + -2.7
6,929 - -4.3
6,929 - -1.8
6,965 + +1.7
6,965 + -0.0
6,966 - +0.4
7,031 + +2.4
7,036 + +0.7
7,036 + +2.2
7,037 - -3.0
7,097 + +0.6
7,113 + -0.3
7,113 + -1.1
7,113 + -3.6
7,272 + ABZR87_RS00020 0.89 -0.3
7,272 + ABZR87_RS00020 0.89 -1.4
7,272 + ABZR87_RS00020 0.89 -1.8
7,272 + ABZR87_RS00020 0.89 +0.9
7,272 + ABZR87_RS00020 0.89 +2.1
7,278 + -0.1
7,278 + -0.9
7,278 + +1.1
8,199 + -1.8
8,211 + +2.7
8,211 + +0.9
8,211 + +3.2
8,243 + -0.3
8,243 + +0.1
8,252 + -0.9
8,252 + -2.7
9,171 - +0.8
9,171 - -0.3

Or see this region's nucleotide sequence