Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18810 and RS_RS18815 are separated by 13 nucleotides RS_RS18815 and RS_RS18820 are separated by 40 nucleotides RS_RS18820 and RS_RS18825 are separated by 32 nucleotides RS_RS18825 and RS_RS18830 are separated by 22 nucleotides
RS_RS18810: RS_RS18810 - flagellar hook protein FlgE, at 449,980 to 451,185
_RS18810
RS_RS18815: RS_RS18815 - flagellar basal-body rod protein FlgF, at 451,199 to 451,936
_RS18815
RS_RS18820: RS_RS18820 - flagellar basal-body rod protein FlgG, at 451,977 to 452,759
_RS18820
RS_RS18825: RS_RS18825 - flagellar L-ring protein FlgH, at 452,792 to 453,526
_RS18825
RS_RS18830: RS_RS18830 - flagellar P-ring protein FlgI, at 453,549 to 454,658
_RS18830
Position (kb) 451
452
453 Strain fitness (log2 ratio) -1
0
1
2 at 451.117 kb on + strand at 451.117 kb on + strand at 451.187 kb on + strand at 451.187 kb on + strand at 451.188 kb on - strand at 451.214 kb on + strand at 451.215 kb on - strand at 451.215 kb on - strand at 451.493 kb on + strand, within RS_RS18815 at 451.493 kb on + strand, within RS_RS18815 at 452.550 kb on + strand, within RS_RS18820 at 452.628 kb on + strand, within RS_RS18820 at 452.629 kb on - strand, within RS_RS18820 at 452.629 kb on - strand, within RS_RS18820 at 452.629 kb on - strand, within RS_RS18820 at 452.695 kb on - strand at 452.778 kb on - strand at 452.798 kb on - strand at 452.987 kb on + strand, within RS_RS18825 at 452.988 kb on - strand, within RS_RS18825 at 453.447 kb on - strand, within RS_RS18825 at 453.462 kb on - strand at 453.462 kb on - strand at 453.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 451,117 + +0.1 451,117 + +0.2 451,187 + +0.4 451,187 + -0.6 451,188 - +0.1 451,214 + -0.2 451,215 - +1.4 451,215 - +0.0 451,493 + RS_RS18815 0.40 +0.1 451,493 + RS_RS18815 0.40 -0.1 452,550 + RS_RS18820 0.73 +0.5 452,628 + RS_RS18820 0.83 +2.6 452,629 - RS_RS18820 0.83 +1.1 452,629 - RS_RS18820 0.83 -0.5 452,629 - RS_RS18820 0.83 +2.0 452,695 - -0.6 452,778 - -0.4 452,798 - +0.8 452,987 + RS_RS18825 0.27 +0.2 452,988 - RS_RS18825 0.27 +0.1 453,447 - RS_RS18825 0.89 -0.3 453,462 - +0.4 453,462 - -0.1 453,462 - -0.3
Or see this region's nucleotide sequence