Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17465 and RS_RS17470 are separated by 138 nucleotides RS_RS17470 and RS_RS17475 are separated by 60 nucleotides RS_RS17475 and RS_RS17480 are separated by 2 nucleotides
RS_RS17465: RS_RS17465 - membrane dipeptidase, at 63,310 to 64,281
_RS17465
RS_RS17470: RS_RS17470 - 4-vinyl reductase, at 64,420 to 64,953
_RS17470
RS_RS17475: RS_RS17475 - FAD-dependent oxidoreductase, at 65,014 to 67,077
_RS17475
RS_RS17480: RS_RS17480 - DUF3483 domain-containing protein, at 67,080 to 69,005
_RS17480
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2 at 64.280 kb on - strand at 64.493 kb on - strand, within RS_RS17470 at 64.493 kb on - strand, within RS_RS17470 at 64.493 kb on - strand, within RS_RS17470 at 64.559 kb on - strand, within RS_RS17470 at 64.574 kb on - strand, within RS_RS17470 at 64.597 kb on + strand, within RS_RS17470 at 64.661 kb on - strand, within RS_RS17470 at 64.799 kb on - strand, within RS_RS17470 at 65.035 kb on - strand at 65.101 kb on + strand at 65.101 kb on - strand at 65.102 kb on - strand at 65.102 kb on - strand at 65.134 kb on + strand at 65.134 kb on + strand at 65.146 kb on + strand at 66.009 kb on + strand, within RS_RS17475 at 66.009 kb on + strand, within RS_RS17475 at 66.070 kb on + strand, within RS_RS17475 at 66.070 kb on + strand, within RS_RS17475 at 66.070 kb on + strand, within RS_RS17475 at 66.071 kb on - strand, within RS_RS17475 at 66.089 kb on - strand, within RS_RS17475 at 66.563 kb on + strand, within RS_RS17475 at 66.564 kb on - strand, within RS_RS17475 at 66.715 kb on + strand, within RS_RS17475 at 66.745 kb on + strand, within RS_RS17475 at 66.745 kb on + strand, within RS_RS17475 at 66.746 kb on - strand, within RS_RS17475 at 66.746 kb on - strand, within RS_RS17475 at 66.763 kb on + strand, within RS_RS17475 at 66.763 kb on + strand, within RS_RS17475 at 66.764 kb on - strand, within RS_RS17475 at 66.881 kb on - strand at 67.045 kb on + strand at 67.162 kb on - strand at 67.233 kb on + strand at 67.272 kb on + strand at 67.273 kb on - strand, within RS_RS17480 at 67.342 kb on - strand, within RS_RS17480 at 67.357 kb on - strand, within RS_RS17480 at 67.386 kb on - strand, within RS_RS17480 at 67.782 kb on + strand, within RS_RS17480 at 67.783 kb on - strand, within RS_RS17480 at 67.982 kb on + strand, within RS_RS17480
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 64,280 - -0.5 64,493 - RS_RS17470 0.14 -0.4 64,493 - RS_RS17470 0.14 -0.5 64,493 - RS_RS17470 0.14 +0.5 64,559 - RS_RS17470 0.26 +0.1 64,574 - RS_RS17470 0.29 +0.1 64,597 + RS_RS17470 0.33 -1.5 64,661 - RS_RS17470 0.45 -0.7 64,799 - RS_RS17470 0.71 -2.3 65,035 - -0.6 65,101 + -0.7 65,101 - -0.3 65,102 - +0.2 65,102 - +0.6 65,134 + +0.2 65,134 + +0.1 65,146 + +2.1 66,009 + RS_RS17475 0.48 -0.0 66,009 + RS_RS17475 0.48 -0.4 66,070 + RS_RS17475 0.51 -0.3 66,070 + RS_RS17475 0.51 -0.2 66,070 + RS_RS17475 0.51 +0.8 66,071 - RS_RS17475 0.51 -0.2 66,089 - RS_RS17475 0.52 +0.1 66,563 + RS_RS17475 0.75 +0.3 66,564 - RS_RS17475 0.75 -0.1 66,715 + RS_RS17475 0.82 -1.5 66,745 + RS_RS17475 0.84 +0.3 66,745 + RS_RS17475 0.84 -2.6 66,746 - RS_RS17475 0.84 +0.0 66,746 - RS_RS17475 0.84 -0.5 66,763 + RS_RS17475 0.85 -0.3 66,763 + RS_RS17475 0.85 +0.9 66,764 - RS_RS17475 0.85 +0.3 66,881 - -0.5 67,045 + -0.9 67,162 - -0.1 67,233 + -0.1 67,272 + -1.6 67,273 - RS_RS17480 0.10 -0.8 67,342 - RS_RS17480 0.14 -0.5 67,357 - RS_RS17480 0.14 +0.7 67,386 - RS_RS17480 0.16 +0.3 67,782 + RS_RS17480 0.36 -2.1 67,783 - RS_RS17480 0.37 -0.9 67,982 + RS_RS17480 0.47 -0.3
Or see this region's nucleotide sequence