Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07310

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07300 and RS_RS07305 are separated by 19 nucleotidesRS_RS07305 and RS_RS07310 overlap by 4 nucleotidesRS_RS07310 and RS_RS07315 are separated by 112 nucleotides RS_RS07300: RS_RS07300 - 6-carboxytetrahydropterin synthase QueD, at 1,552,057 to 1,552,533 _RS07300 RS_RS07305: RS_RS07305 - tRNA adenosine(34) deaminase TadA, at 1,552,553 to 1,553,104 _RS07305 RS_RS07310: RS_RS07310 - muramoyltetrapeptide carboxypeptidase, at 1,553,101 to 1,554,027 _RS07310 RS_RS07315: RS_RS07315 - ABC-F family ATPase, at 1,554,140 to 1,555,762 _RS07315 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -2 -1 0 1at 1552.438 kb on + strand, within RS_RS07300at 1552.474 kb on + strandat 1554.446 kb on + strand, within RS_RS07315at 1554.476 kb on + strand, within RS_RS07315at 1554.516 kb on - strand, within RS_RS07315at 1554.525 kb on - strand, within RS_RS07315at 1554.818 kb on + strand, within RS_RS07315at 1554.848 kb on + strand, within RS_RS07315at 1554.857 kb on + strand, within RS_RS07315at 1554.857 kb on + strand, within RS_RS07315at 1554.858 kb on - strand, within RS_RS07315

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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1,552,438 + RS_RS07300 0.80 -2.2
1,552,474 + +0.8
1,554,446 + RS_RS07315 0.19 -1.1
1,554,476 + RS_RS07315 0.21 -0.4
1,554,516 - RS_RS07315 0.23 +0.4
1,554,525 - RS_RS07315 0.24 -0.2
1,554,818 + RS_RS07315 0.42 -0.4
1,554,848 + RS_RS07315 0.44 -0.1
1,554,857 + RS_RS07315 0.44 -0.8
1,554,857 + RS_RS07315 0.44 -0.1
1,554,858 - RS_RS07315 0.44 -0.3

Or see this region's nucleotide sequence