Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02685 and RS_RS02690 are separated by 87 nucleotides RS_RS02690 and RS_RS25320 are separated by 258 nucleotides
RS_RS02685: RS_RS02685 - acyl-CoA dehydrogenase, at 578,091 to 580,598
_RS02685
RS_RS02690: RS_RS02690 - TetR/AcrR family transcriptional regulator, at 580,686 to 581,708
_RS02690
RS_RS25320: RS_RS25320 - hypothetical protein, at 581,967 to 582,201
_RS25320
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.752 kb on + strand, within RS_RS02685 at 579.753 kb on - strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.755 kb on - strand, within RS_RS02685 at 579.755 kb on - strand, within RS_RS02685 at 579.916 kb on + strand, within RS_RS02685 at 579.944 kb on - strand, within RS_RS02685 at 580.117 kb on + strand, within RS_RS02685 at 580.117 kb on + strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 581.303 kb on - strand, within RS_RS02690 at 581.317 kb on + strand, within RS_RS02690 at 581.317 kb on + strand, within RS_RS02690 at 581.318 kb on - strand, within RS_RS02690 at 581.347 kb on + strand, within RS_RS02690 at 581.570 kb on - strand, within RS_RS02690 at 581.570 kb on - strand, within RS_RS02690 at 581.788 kb on - strand at 581.791 kb on + strand at 581.791 kb on + strand at 581.791 kb on + strand at 581.791 kb on + strand at 581.792 kb on - strand at 581.828 kb on - strand at 581.861 kb on + strand at 581.861 kb on + strand at 581.862 kb on - strand at 581.889 kb on + strand at 582.543 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 579,752 + RS_RS02685 0.66 -1.3 579,753 - RS_RS02685 0.66 -0.3 579,754 + RS_RS02685 0.66 +0.1 579,754 + RS_RS02685 0.66 +0.5 579,754 + RS_RS02685 0.66 -0.2 579,754 + RS_RS02685 0.66 +0.1 579,755 - RS_RS02685 0.66 -0.3 579,755 - RS_RS02685 0.66 -0.1 579,916 + RS_RS02685 0.73 +1.1 579,944 - RS_RS02685 0.74 -0.5 580,117 + RS_RS02685 0.81 +0.0 580,117 + RS_RS02685 0.81 +0.2 580,118 - RS_RS02685 0.81 +0.3 580,118 - RS_RS02685 0.81 +1.3 580,118 - RS_RS02685 0.81 +1.3 580,118 - RS_RS02685 0.81 -0.1 580,118 - RS_RS02685 0.81 +0.5 581,303 - RS_RS02690 0.60 -0.1 581,317 + RS_RS02690 0.62 +0.6 581,317 + RS_RS02690 0.62 -1.8 581,318 - RS_RS02690 0.62 -0.3 581,347 + RS_RS02690 0.65 +0.2 581,570 - RS_RS02690 0.86 -0.4 581,570 - RS_RS02690 0.86 -0.5 581,788 - +0.4 581,791 + -0.0 581,791 + +0.2 581,791 + -0.1 581,791 + +0.9 581,792 - +2.5 581,828 - -0.1 581,861 + +0.5 581,861 + -1.0 581,862 - +1.1 581,889 + -0.3 582,543 + -0.4
Or see this region's nucleotide sequence