Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00075 and RS_RS25225 are separated by 169 nucleotides RS_RS25225 and RS_RS00080 overlap by 9 nucleotides RS_RS00080 and RS_RS00085 are separated by 844 nucleotides
RS_RS00075: RS_RS00075 - 3-phosphoglycerate dehydrogenase, at 17,482 to 18,510
_RS00075
RS_RS25225: RS_RS25225 - hypothetical protein, at 18,680 to 18,940
_RS25225
RS_RS00080: RS_RS00080 - phosphoenolpyruvate carboxykinase, at 18,932 to 20,800
_RS00080
RS_RS00085: RS_RS00085 - DNA-binding response regulator, at 21,645 to 22,484
_RS00085
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.131 kb on + strand, within RS_RS00075 at 18.131 kb on + strand, within RS_RS00075 at 18.132 kb on - strand, within RS_RS00075 at 18.132 kb on - strand, within RS_RS00075 at 18.424 kb on + strand at 18.424 kb on + strand at 18.425 kb on - strand at 18.485 kb on + strand at 18.486 kb on - strand at 18.486 kb on - strand at 18.486 kb on - strand at 18.486 kb on - strand at 18.567 kb on + strand at 18.567 kb on + strand at 18.568 kb on - strand at 18.568 kb on - strand at 18.568 kb on - strand at 18.568 kb on - strand at 18.568 kb on - strand at 18.568 kb on - strand at 18.744 kb on + strand, within RS_RS25225 at 18.744 kb on + strand, within RS_RS25225 at 18.745 kb on - strand, within RS_RS25225 at 18.745 kb on - strand, within RS_RS25225 at 18.980 kb on + strand at 18.980 kb on + strand at 18.980 kb on + strand at 18.981 kb on - strand at 18.981 kb on - strand at 18.981 kb on - strand at 19.076 kb on + strand at 19.077 kb on - strand at 19.077 kb on - strand at 19.151 kb on + strand, within RS_RS00080 at 19.151 kb on + strand, within RS_RS00080 at 19.151 kb on + strand, within RS_RS00080 at 19.152 kb on - strand, within RS_RS00080 at 19.152 kb on - strand, within RS_RS00080 at 19.319 kb on + strand, within RS_RS00080 at 19.319 kb on + strand, within RS_RS00080 at 19.320 kb on - strand, within RS_RS00080 at 19.320 kb on - strand, within RS_RS00080 at 19.320 kb on - strand, within RS_RS00080 at 19.394 kb on + strand, within RS_RS00080 at 19.394 kb on + strand, within RS_RS00080 at 19.394 kb on + strand, within RS_RS00080 at 19.394 kb on + strand, within RS_RS00080 at 19.394 kb on + strand, within RS_RS00080 at 19.395 kb on - strand, within RS_RS00080 at 19.395 kb on - strand, within RS_RS00080 at 19.443 kb on - strand, within RS_RS00080 at 19.443 kb on - strand, within RS_RS00080 at 19.487 kb on - strand, within RS_RS00080 at 19.550 kb on + strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.551 kb on - strand, within RS_RS00080 at 19.730 kb on + strand, within RS_RS00080 at 19.731 kb on - strand, within RS_RS00080 at 19.731 kb on - strand, within RS_RS00080 at 19.886 kb on + strand, within RS_RS00080 at 19.887 kb on - strand, within RS_RS00080 at 20.285 kb on + strand, within RS_RS00080 at 20.285 kb on + strand, within RS_RS00080 at 20.285 kb on + strand, within RS_RS00080 at 20.285 kb on + strand, within RS_RS00080 at 20.285 kb on + strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.286 kb on - strand, within RS_RS00080 at 20.612 kb on + strand, within RS_RS00080 at 20.613 kb on - strand, within RS_RS00080 at 20.819 kb on + strand at 20.819 kb on + strand at 20.819 kb on + strand at 20.820 kb on - strand at 20.820 kb on - strand at 20.889 kb on - strand at 20.899 kb on + strand at 20.913 kb on + strand at 20.945 kb on + strand at 21.016 kb on - strand at 21.113 kb on - strand at 21.189 kb on + strand at 21.220 kb on + strand at 21.221 kb on - strand at 21.370 kb on + strand at 21.370 kb on + strand at 21.370 kb on + strand at 21.371 kb on - strand at 21.371 kb on - strand at 21.371 kb on - strand at 21.371 kb on - strand at 21.371 kb on - strand at 21.522 kb on + strand at 21.523 kb on - strand at 21.523 kb on - strand at 21.523 kb on - strand at 21.560 kb on - strand at 21.560 kb on - strand at 21.611 kb on - strand at 21.611 kb on - strand at 21.640 kb on + strand at 21.641 kb on - strand at 21.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 18,131 + RS_RS00075 0.63 -0.1 18,131 + RS_RS00075 0.63 +0.1 18,132 - RS_RS00075 0.63 +0.8 18,132 - RS_RS00075 0.63 -0.2 18,424 + +0.2 18,424 + -0.2 18,425 - -0.3 18,485 + -0.1 18,486 - -0.0 18,486 - +0.3 18,486 - -0.2 18,486 - -0.0 18,567 + -0.1 18,567 + +0.0 18,568 - -1.1 18,568 - +0.1 18,568 - +0.4 18,568 - -0.0 18,568 - +0.2 18,568 - +0.6 18,744 + RS_RS25225 0.25 -3.0 18,744 + RS_RS25225 0.25 -0.6 18,745 - RS_RS25225 0.25 +0.1 18,745 - RS_RS25225 0.25 -0.3 18,980 + -0.1 18,980 + +0.2 18,980 + -1.6 18,981 - -0.0 18,981 - -0.6 18,981 - +0.5 19,076 + -0.0 19,077 - -0.4 19,077 - +0.5 19,151 + RS_RS00080 0.12 -0.1 19,151 + RS_RS00080 0.12 -0.6 19,151 + RS_RS00080 0.12 +0.5 19,152 - RS_RS00080 0.12 -0.8 19,152 - RS_RS00080 0.12 +0.2 19,319 + RS_RS00080 0.21 -0.5 19,319 + RS_RS00080 0.21 +0.2 19,320 - RS_RS00080 0.21 +0.7 19,320 - RS_RS00080 0.21 +0.7 19,320 - RS_RS00080 0.21 +0.8 19,394 + RS_RS00080 0.25 -0.7 19,394 + RS_RS00080 0.25 +2.0 19,394 + RS_RS00080 0.25 -0.3 19,394 + RS_RS00080 0.25 -0.3 19,394 + RS_RS00080 0.25 -0.0 19,395 - RS_RS00080 0.25 +0.8 19,395 - RS_RS00080 0.25 -0.4 19,443 - RS_RS00080 0.27 -0.3 19,443 - RS_RS00080 0.27 +1.0 19,487 - RS_RS00080 0.30 +0.2 19,550 + RS_RS00080 0.33 -0.3 19,551 - RS_RS00080 0.33 -0.0 19,551 - RS_RS00080 0.33 -0.2 19,551 - RS_RS00080 0.33 -0.3 19,551 - RS_RS00080 0.33 +0.5 19,551 - RS_RS00080 0.33 -0.5 19,551 - RS_RS00080 0.33 -0.1 19,730 + RS_RS00080 0.43 -0.8 19,731 - RS_RS00080 0.43 +0.1 19,731 - RS_RS00080 0.43 -0.0 19,886 + RS_RS00080 0.51 -0.6 19,887 - RS_RS00080 0.51 -0.2 20,285 + RS_RS00080 0.72 +0.2 20,285 + RS_RS00080 0.72 +2.2 20,285 + RS_RS00080 0.72 +0.4 20,285 + RS_RS00080 0.72 -0.7 20,285 + RS_RS00080 0.72 -0.3 20,286 - RS_RS00080 0.72 +1.0 20,286 - RS_RS00080 0.72 -0.3 20,286 - RS_RS00080 0.72 -0.2 20,286 - RS_RS00080 0.72 -0.7 20,286 - RS_RS00080 0.72 +0.1 20,286 - RS_RS00080 0.72 +1.0 20,286 - RS_RS00080 0.72 +0.4 20,286 - RS_RS00080 0.72 +0.3 20,286 - RS_RS00080 0.72 +0.4 20,612 + RS_RS00080 0.90 +0.5 20,613 - RS_RS00080 0.90 -0.2 20,819 + +0.7 20,819 + +1.5 20,819 + -0.0 20,820 - -0.2 20,820 - -0.4 20,889 - +1.0 20,899 + +0.4 20,913 + -0.2 20,945 + -0.1 21,016 - -0.2 21,113 - +0.1 21,189 + -3.1 21,220 + -0.6 21,221 - +1.0 21,370 + -0.9 21,370 + -0.2 21,370 + -0.3 21,371 - +0.3 21,371 - +0.2 21,371 - +0.3 21,371 - +0.0 21,371 - -0.2 21,522 + -0.2 21,523 - +0.1 21,523 - +0.8 21,523 - +0.4 21,560 - +0.2 21,560 - +0.8 21,611 - -0.3 21,611 - -0.3 21,640 + +0.5 21,641 - +0.4 21,641 - -0.1
Or see this region's nucleotide sequence