Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3575

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3574 and Psyr_3575 are separated by 265 nucleotidesPsyr_3575 and Psyr_3576 are separated by 35 nucleotidesPsyr_3576 and Psyr_3577 are separated by 453 nucleotides Psyr_3574: Psyr_3574 - Helix-turn-helix, Fis-type, at 4,256,450 to 4,258,027 _3574 Psyr_3575: Psyr_3575 - Phenylalanine 4-hydroxylase, at 4,258,293 to 4,259,090 _3575 Psyr_3576: Psyr_3576 - pterin-4-alpha-carbinolamine dehydratase, at 4,259,126 to 4,259,482 _3576 Psyr_3577: Psyr_3577 - conserved hypothetical protein, at 4,259,936 to 4,260,115 _3577 Position (kb) 4258 4259 4260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4257.410 kb on - strand, within Psyr_3574at 4257.410 kb on - strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.447 kb on + strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.448 kb on - strand, within Psyr_3574at 4257.719 kb on - strand, within Psyr_3574at 4257.903 kb on + strandat 4257.903 kb on + strandat 4257.903 kb on + strandat 4257.903 kb on + strandat 4257.903 kb on + strandat 4257.903 kb on + strandat 4257.904 kb on - strandat 4257.904 kb on - strandat 4257.904 kb on - strandat 4257.904 kb on - strandat 4257.958 kb on - strandat 4258.086 kb on - strandat 4258.086 kb on - strandat 4258.086 kb on - strandat 4258.086 kb on - strandat 4258.250 kb on + strandat 4258.308 kb on + strandat 4258.308 kb on + strandat 4258.308 kb on + strandat 4258.348 kb on - strandat 4258.428 kb on + strand, within Psyr_3575at 4258.428 kb on + strand, within Psyr_3575at 4258.428 kb on + strand, within Psyr_3575at 4258.629 kb on + strand, within Psyr_3575at 4258.629 kb on + strand, within Psyr_3575at 4258.629 kb on + strand, within Psyr_3575at 4258.630 kb on - strand, within Psyr_3575at 4258.660 kb on + strand, within Psyr_3575at 4258.660 kb on + strand, within Psyr_3575at 4258.660 kb on + strand, within Psyr_3575at 4258.660 kb on + strand, within Psyr_3575at 4258.661 kb on - strand, within Psyr_3575at 4258.661 kb on - strand, within Psyr_3575at 4258.716 kb on + strand, within Psyr_3575at 4258.758 kb on + strand, within Psyr_3575at 4258.759 kb on - strand, within Psyr_3575at 4258.806 kb on - strand, within Psyr_3575at 4258.866 kb on + strand, within Psyr_3575at 4258.866 kb on + strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.867 kb on - strand, within Psyr_3575at 4258.956 kb on + strand, within Psyr_3575at 4258.956 kb on + strand, within Psyr_3575at 4258.956 kb on + strand, within Psyr_3575at 4258.956 kb on + strand, within Psyr_3575at 4258.957 kb on - strand, within Psyr_3575at 4259.066 kb on + strandat 4259.125 kb on + strandat 4259.480 kb on + strandat 4259.619 kb on + strandat 4259.676 kb on + strandat 4259.676 kb on + strandat 4259.676 kb on + strandat 4259.677 kb on - strandat 4259.677 kb on - strandat 4259.721 kb on + strandat 4259.896 kb on + strandat 4259.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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4,257,410 - Psyr_3574 0.61 +0.7
4,257,410 - Psyr_3574 0.61 -1.7
4,257,447 + Psyr_3574 0.63 +0.1
4,257,447 + Psyr_3574 0.63 +0.4
4,257,447 + Psyr_3574 0.63 -0.1
4,257,447 + Psyr_3574 0.63 +0.0
4,257,447 + Psyr_3574 0.63 +0.1
4,257,447 + Psyr_3574 0.63 +2.1
4,257,447 + Psyr_3574 0.63 -1.8
4,257,447 + Psyr_3574 0.63 -1.7
4,257,447 + Psyr_3574 0.63 -0.8
4,257,448 - Psyr_3574 0.63 +0.0
4,257,448 - Psyr_3574 0.63 -0.1
4,257,448 - Psyr_3574 0.63 -1.3
4,257,448 - Psyr_3574 0.63 -0.5
4,257,448 - Psyr_3574 0.63 -0.6
4,257,448 - Psyr_3574 0.63 -1.4
4,257,448 - Psyr_3574 0.63 -0.2
4,257,448 - Psyr_3574 0.63 -1.4
4,257,448 - Psyr_3574 0.63 -2.4
4,257,448 - Psyr_3574 0.63 +0.7
4,257,719 - Psyr_3574 0.80 +1.3
4,257,903 + -0.6
4,257,903 + -0.5
4,257,903 + +1.7
4,257,903 + -0.5
4,257,903 + +0.2
4,257,903 + -0.4
4,257,904 - +0.6
4,257,904 - +3.1
4,257,904 - -1.5
4,257,904 - -0.2
4,257,958 - -1.3
4,258,086 - -0.0
4,258,086 - +3.4
4,258,086 - -1.5
4,258,086 - +1.4
4,258,250 + +0.8
4,258,308 + -0.7
4,258,308 + +0.6
4,258,308 + -1.5
4,258,348 - +0.5
4,258,428 + Psyr_3575 0.17 -2.8
4,258,428 + Psyr_3575 0.17 -2.2
4,258,428 + Psyr_3575 0.17 +3.7
4,258,629 + Psyr_3575 0.42 -0.5
4,258,629 + Psyr_3575 0.42 -1.1
4,258,629 + Psyr_3575 0.42 -1.2
4,258,630 - Psyr_3575 0.42 -0.0
4,258,660 + Psyr_3575 0.46 -2.5
4,258,660 + Psyr_3575 0.46 -0.1
4,258,660 + Psyr_3575 0.46 -2.0
4,258,660 + Psyr_3575 0.46 +2.4
4,258,661 - Psyr_3575 0.46 -1.5
4,258,661 - Psyr_3575 0.46 -2.2
4,258,716 + Psyr_3575 0.53 -0.7
4,258,758 + Psyr_3575 0.58 -1.1
4,258,759 - Psyr_3575 0.58 +0.8
4,258,806 - Psyr_3575 0.64 -0.5
4,258,866 + Psyr_3575 0.72 -1.2
4,258,866 + Psyr_3575 0.72 -0.7
4,258,867 - Psyr_3575 0.72 +1.3
4,258,867 - Psyr_3575 0.72 +0.6
4,258,867 - Psyr_3575 0.72 +2.0
4,258,867 - Psyr_3575 0.72 -1.2
4,258,867 - Psyr_3575 0.72 -0.9
4,258,867 - Psyr_3575 0.72 -3.1
4,258,867 - Psyr_3575 0.72 -0.2
4,258,956 + Psyr_3575 0.83 +1.3
4,258,956 + Psyr_3575 0.83 -1.5
4,258,956 + Psyr_3575 0.83 +0.2
4,258,956 + Psyr_3575 0.83 +0.2
4,258,957 - Psyr_3575 0.83 -0.9
4,259,066 + -1.2
4,259,125 + -3.0
4,259,480 + -1.8
4,259,619 + +1.4
4,259,676 + -2.0
4,259,676 + -0.4
4,259,676 + +2.1
4,259,677 - -0.1
4,259,677 - -0.6
4,259,721 + -0.2
4,259,896 + +0.1
4,259,936 - -1.2

Or see this region's nucleotide sequence