Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2137

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2135 and Psyr_2136 are separated by 75 nucleotidesPsyr_2136 and Psyr_2137 are separated by 6 nucleotidesPsyr_2137 and Psyr_2138 are separated by 89 nucleotides Psyr_2135: Psyr_2135 - molybdenum cofactor guanylyltransferase, at 2,494,494 to 2,495,099 _2135 Psyr_2136: Psyr_2136 - Molybdenum cofactor biosynthesis protein, at 2,495,175 to 2,495,714 _2136 Psyr_2137: Psyr_2137 - molybdopterin molybdochelatase, at 2,495,721 to 2,496,932 _2137 Psyr_2138: Psyr_2138 - Glycosyl transferase, family 2, at 2,497,022 to 2,497,948 _2138 Position (kb) 2495 2496 2497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2494.785 kb on + strand, within Psyr_2135at 2494.785 kb on + strand, within Psyr_2135at 2494.842 kb on + strand, within Psyr_2135at 2494.842 kb on + strand, within Psyr_2135at 2494.843 kb on - strand, within Psyr_2135at 2494.843 kb on - strand, within Psyr_2135at 2495.066 kb on + strandat 2495.066 kb on + strandat 2495.067 kb on - strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.137 kb on - strandat 2495.137 kb on - strandat 2495.137 kb on - strandat 2495.138 kb on + strandat 2495.138 kb on + strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.204 kb on - strandat 2495.210 kb on + strandat 2495.210 kb on + strandat 2495.211 kb on - strandat 2495.211 kb on - strandat 2495.341 kb on - strand, within Psyr_2136at 2496.330 kb on + strand, within Psyr_2137at 2496.330 kb on + strand, within Psyr_2137at 2496.330 kb on + strand, within Psyr_2137at 2496.331 kb on - strand, within Psyr_2137at 2496.667 kb on - strand, within Psyr_2137at 2496.823 kb on + strandat 2496.824 kb on - strandat 2496.968 kb on - strandat 2496.968 kb on - strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.058 kb on + strandat 2497.059 kb on - strandat 2497.059 kb on - strandat 2497.263 kb on - strand, within Psyr_2138at 2497.263 kb on - strand, within Psyr_2138at 2497.263 kb on - strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.622 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.659 kb on - strand, within Psyr_2138at 2497.659 kb on - strandat 2497.659 kb on - strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.834 kb on + strand, within Psyr_2138at 2497.856 kb on + strandat 2497.857 kb on - strandat 2497.857 kb on - strandat 2497.916 kb on + strandat 2497.916 kb on + strandat 2497.917 kb on - strandat 2497.917 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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2,494,785 + Psyr_2135 0.48 -2.8
2,494,785 + Psyr_2135 0.48 +0.1
2,494,842 + Psyr_2135 0.57 -0.3
2,494,842 + Psyr_2135 0.57 -2.0
2,494,843 - Psyr_2135 0.58 +0.7
2,494,843 - Psyr_2135 0.58 -0.3
2,495,066 + -0.1
2,495,066 + +0.3
2,495,067 - -0.6
2,495,136 + -0.2
2,495,136 + -0.7
2,495,136 + +0.1
2,495,136 + -0.3
2,495,137 - -3.5
2,495,137 - +0.3
2,495,137 - +0.1
2,495,138 + +0.5
2,495,138 + -1.5
2,495,139 - -0.5
2,495,139 - +1.1
2,495,139 - +0.6
2,495,139 - -0.9
2,495,139 - -2.9
2,495,139 - +3.7
2,495,204 - -1.9
2,495,210 + -0.6
2,495,210 + -1.5
2,495,211 - -0.4
2,495,211 - -0.6
2,495,341 - Psyr_2136 0.31 -0.9
2,496,330 + Psyr_2137 0.50 -1.8
2,496,330 + Psyr_2137 0.50 +1.1
2,496,330 + Psyr_2137 0.50 -1.9
2,496,331 - Psyr_2137 0.50 -0.6
2,496,667 - Psyr_2137 0.78 -0.5
2,496,823 + +1.0
2,496,824 - -0.5
2,496,968 - -0.5
2,496,968 - -2.0
2,497,015 + -0.3
2,497,015 + +0.5
2,497,015 + -0.1
2,497,015 + +0.1
2,497,015 + +2.1
2,497,015 + -0.2
2,497,016 - -2.3
2,497,016 - -1.3
2,497,016 - -0.6
2,497,016 - +2.9
2,497,016 - -2.5
2,497,016 - -0.9
2,497,016 - +0.1
2,497,058 + -0.5
2,497,059 - +0.9
2,497,059 - -0.9
2,497,263 - Psyr_2138 0.26 -0.2
2,497,263 - Psyr_2138 0.26 +0.8
2,497,263 - Psyr_2138 0.26 -0.5
2,497,271 + Psyr_2138 0.27 -3.4
2,497,271 + Psyr_2138 0.27 -1.2
2,497,271 + Psyr_2138 0.27 -1.0
2,497,271 + Psyr_2138 0.27 +1.8
2,497,271 + Psyr_2138 0.27 +0.2
2,497,271 + Psyr_2138 0.27 +0.4
2,497,271 + Psyr_2138 0.27 -1.2
2,497,271 + Psyr_2138 0.27 -0.9
2,497,271 + Psyr_2138 0.27 +0.9
2,497,271 + Psyr_2138 0.27 -0.2
2,497,271 + Psyr_2138 0.27 +0.5
2,497,272 - Psyr_2138 0.27 +0.4
2,497,272 - Psyr_2138 0.27 +0.1
2,497,272 - Psyr_2138 0.27 -1.7
2,497,272 - Psyr_2138 0.27 +2.5
2,497,272 - Psyr_2138 0.27 +1.4
2,497,272 - Psyr_2138 0.27 +4.1
2,497,272 - Psyr_2138 0.27 -1.6
2,497,272 - Psyr_2138 0.27 -0.6
2,497,272 - Psyr_2138 0.27 -0.6
2,497,272 - Psyr_2138 0.27 +2.1
2,497,272 - Psyr_2138 0.27 +3.1
2,497,272 - Psyr_2138 0.27 +0.9
2,497,295 + Psyr_2138 0.29 +0.3
2,497,295 + Psyr_2138 0.29 +2.4
2,497,295 + Psyr_2138 0.29 -0.9
2,497,295 + Psyr_2138 0.29 -0.2
2,497,296 - Psyr_2138 0.30 -1.7
2,497,296 - Psyr_2138 0.30 -1.9
2,497,296 - Psyr_2138 0.30 -0.4
2,497,296 - Psyr_2138 0.30 +0.1
2,497,296 - Psyr_2138 0.30 +0.3
2,497,296 - Psyr_2138 0.30 -0.5
2,497,580 + Psyr_2138 0.60 -0.6
2,497,580 + Psyr_2138 0.60 -0.5
2,497,580 + Psyr_2138 0.60 -2.4
2,497,580 + Psyr_2138 0.60 +0.9
2,497,580 + Psyr_2138 0.60 +2.7
2,497,580 + Psyr_2138 0.60 -1.3
2,497,580 + Psyr_2138 0.60 +0.6
2,497,580 + Psyr_2138 0.60 -1.3
2,497,580 + Psyr_2138 0.60 +1.7
2,497,580 + Psyr_2138 0.60 +0.1
2,497,580 + Psyr_2138 0.60 -0.5
2,497,580 + Psyr_2138 0.60 +0.7
2,497,580 + Psyr_2138 0.60 -0.1
2,497,580 + Psyr_2138 0.60 -0.8
2,497,580 + Psyr_2138 0.60 -0.0
2,497,580 + Psyr_2138 0.60 -0.9
2,497,580 + Psyr_2138 0.60 +0.1
2,497,580 + Psyr_2138 0.60 +0.5
2,497,580 + Psyr_2138 0.60 +0.3
2,497,581 - Psyr_2138 0.60 -0.1
2,497,581 - Psyr_2138 0.60 +0.1
2,497,581 - Psyr_2138 0.60 -2.8
2,497,581 - Psyr_2138 0.60 -0.3
2,497,581 - Psyr_2138 0.60 -0.4
2,497,581 - Psyr_2138 0.60 +1.9
2,497,581 - Psyr_2138 0.60 -0.4
2,497,581 - Psyr_2138 0.60 -1.5
2,497,581 - Psyr_2138 0.60 -1.9
2,497,581 - Psyr_2138 0.60 -0.0
2,497,581 - Psyr_2138 0.60 +1.3
2,497,581 - Psyr_2138 0.60 -2.2
2,497,581 - Psyr_2138 0.60 +1.7
2,497,581 - Psyr_2138 0.60 +2.2
2,497,581 - Psyr_2138 0.60 -1.5
2,497,581 - Psyr_2138 0.60 +0.0
2,497,581 - Psyr_2138 0.60 -2.5
2,497,581 - Psyr_2138 0.60 -1.7
2,497,622 + Psyr_2138 0.65 -0.5
2,497,658 + Psyr_2138 0.69 +1.5
2,497,658 + Psyr_2138 0.69 +1.1
2,497,658 + Psyr_2138 0.69 +0.0
2,497,659 - Psyr_2138 0.69 +0.8
2,497,659 - +1.1
2,497,659 - Psyr_2138 0.69 -1.6
2,497,766 + Psyr_2138 0.80 -0.1
2,497,766 + Psyr_2138 0.80 -0.3
2,497,766 + Psyr_2138 0.80 +0.6
2,497,834 + Psyr_2138 0.88 -1.9
2,497,856 + -1.7
2,497,857 - -0.9
2,497,857 - +1.7
2,497,916 + -2.3
2,497,916 + +0.3
2,497,917 - -1.1
2,497,917 - +0.8

Or see this region's nucleotide sequence