Experiment: KB with Conessine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1716 and Psyr_1717 overlap by 4 nucleotides Psyr_1717 and Psyr_1718 overlap by 4 nucleotides
Psyr_1716: Psyr_1716 - conserved hypothetical protein, at 1,944,575 to 1,946,233
_1716
Psyr_1717: Psyr_1717 - TPR repeat:von Willebrand factor, type A, at 1,946,230 to 1,947,948
_1717
Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003
_1718
Position (kb) 1946
1947
1948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1945.360 kb on + strand, within Psyr_1716 at 1945.399 kb on + strand, within Psyr_1716 at 1945.587 kb on - strand, within Psyr_1716 at 1945.595 kb on + strand, within Psyr_1716 at 1945.614 kb on + strand, within Psyr_1716 at 1945.614 kb on + strand, within Psyr_1716 at 1945.761 kb on + strand, within Psyr_1716 at 1945.797 kb on + strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1946.213 kb on + strand at 1946.220 kb on + strand at 1946.221 kb on - strand at 1946.221 kb on - strand at 1946.727 kb on - strand, within Psyr_1717 at 1946.792 kb on + strand, within Psyr_1717 at 1946.793 kb on - strand, within Psyr_1717 at 1947.134 kb on + strand, within Psyr_1717 at 1948.093 kb on + strand, within Psyr_1718 at 1948.201 kb on + strand, within Psyr_1718 at 1948.202 kb on - strand, within Psyr_1718 at 1948.439 kb on + strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Conessine 10 mM remove 1,945,360 + Psyr_1716 0.47 -2.6 1,945,399 + Psyr_1716 0.50 +0.2 1,945,587 - Psyr_1716 0.61 -1.1 1,945,595 + Psyr_1716 0.61 -0.7 1,945,614 + Psyr_1716 0.63 -0.4 1,945,614 + Psyr_1716 0.63 -1.4 1,945,761 + Psyr_1716 0.71 +1.1 1,945,797 + Psyr_1716 0.74 +1.4 1,945,798 - Psyr_1716 0.74 -1.7 1,945,798 - Psyr_1716 0.74 +0.9 1,945,798 - Psyr_1716 0.74 +1.5 1,945,798 - Psyr_1716 0.74 +0.8 1,945,798 - Psyr_1716 0.74 +1.1 1,945,798 - Psyr_1716 0.74 -1.0 1,945,798 - Psyr_1716 0.74 +3.7 1,946,213 + -1.7 1,946,220 + -0.0 1,946,221 - -0.1 1,946,221 - +0.9 1,946,727 - Psyr_1717 0.29 -2.0 1,946,792 + Psyr_1717 0.33 +0.6 1,946,793 - Psyr_1717 0.33 -2.1 1,947,134 + Psyr_1717 0.53 -2.2 1,948,093 + Psyr_1718 0.14 +1.3 1,948,201 + Psyr_1718 0.24 +3.5 1,948,202 - Psyr_1718 0.24 -2.8 1,948,439 + Psyr_1718 0.47 +1.4 1,948,547 - Psyr_1718 0.57 +1.5 1,948,547 - Psyr_1718 0.57 -1.0
Or see this region's nucleotide sequence