Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1297

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1296 and Psyr_1297 are separated by 142 nucleotidesPsyr_1297 and Psyr_1298 are separated by 61 nucleotides Psyr_1296: Psyr_1296 - conserved hypothetical protein, at 1,464,224 to 1,465,102 _1296 Psyr_1297: Psyr_1297 - YaeQ, at 1,465,245 to 1,465,931 _1297 Psyr_1298: Psyr_1298 - exonuclease RecJ, at 1,465,993 to 1,467,708 _1298 Position (kb) 1465 1466Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1464.261 kb on + strandat 1464.261 kb on + strandat 1464.262 kb on - strandat 1464.297 kb on + strandat 1464.297 kb on + strandat 1464.298 kb on - strandat 1464.298 kb on - strandat 1464.393 kb on + strand, within Psyr_1296at 1464.394 kb on - strand, within Psyr_1296at 1464.394 kb on - strand, within Psyr_1296at 1464.406 kb on - strand, within Psyr_1296at 1464.562 kb on - strand, within Psyr_1296at 1464.621 kb on + strand, within Psyr_1296at 1464.621 kb on + strand, within Psyr_1296at 1464.622 kb on - strand, within Psyr_1296at 1464.622 kb on - strandat 1464.698 kb on + strandat 1464.698 kb on + strand, within Psyr_1296at 1464.698 kb on + strand, within Psyr_1296at 1464.698 kb on + strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.699 kb on - strand, within Psyr_1296at 1464.702 kb on + strand, within Psyr_1296at 1464.703 kb on - strand, within Psyr_1296at 1464.734 kb on + strand, within Psyr_1296at 1464.734 kb on + strand, within Psyr_1296at 1464.735 kb on - strand, within Psyr_1296at 1464.897 kb on + strand, within Psyr_1296at 1465.235 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.244 kb on + strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.245 kb on - strandat 1465.248 kb on + strandat 1465.248 kb on + strandat 1465.248 kb on + strandat 1465.248 kb on + strandat 1465.249 kb on - strandat 1465.249 kb on - strandat 1465.376 kb on + strand, within Psyr_1297at 1465.376 kb on + strand, within Psyr_1297at 1465.376 kb on + strand, within Psyr_1297at 1465.377 kb on - strand, within Psyr_1297at 1465.377 kb on - strand, within Psyr_1297at 1465.411 kb on - strand, within Psyr_1297at 1465.411 kb on - strand, within Psyr_1297at 1465.527 kb on + strand, within Psyr_1297at 1465.527 kb on + strand, within Psyr_1297at 1465.528 kb on - strand, within Psyr_1297at 1465.528 kb on - strand, within Psyr_1297at 1465.539 kb on + strand, within Psyr_1297at 1465.539 kb on + strand, within Psyr_1297at 1465.539 kb on + strand, within Psyr_1297at 1465.540 kb on - strand, within Psyr_1297at 1465.540 kb on - strand, within Psyr_1297at 1465.540 kb on - strand, within Psyr_1297at 1465.540 kb on - strand, within Psyr_1297at 1466.069 kb on - strandat 1466.162 kb on + strandat 1466.293 kb on + strand, within Psyr_1298at 1466.293 kb on + strand, within Psyr_1298at 1466.294 kb on - strand, within Psyr_1298at 1466.332 kb on - strand, within Psyr_1298at 1466.417 kb on + strand, within Psyr_1298at 1466.527 kb on - strand, within Psyr_1298at 1466.527 kb on - strand, within Psyr_1298at 1466.569 kb on + strand, within Psyr_1298at 1466.569 kb on + strand, within Psyr_1298at 1466.570 kb on - strand, within Psyr_1298at 1466.573 kb on + strand, within Psyr_1298at 1466.573 kb on + strand, within Psyr_1298at 1466.573 kb on + strand, within Psyr_1298at 1466.574 kb on - strand, within Psyr_1298at 1466.574 kb on - strand, within Psyr_1298

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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1,464,261 + +1.5
1,464,261 + +1.0
1,464,262 - -0.1
1,464,297 + +0.2
1,464,297 + +1.2
1,464,298 - +0.3
1,464,298 - +2.0
1,464,393 + Psyr_1296 0.19 +1.0
1,464,394 - Psyr_1296 0.19 -1.7
1,464,394 - Psyr_1296 0.19 -0.7
1,464,406 - Psyr_1296 0.21 +0.6
1,464,562 - Psyr_1296 0.38 +2.2
1,464,621 + Psyr_1296 0.45 +2.2
1,464,621 + Psyr_1296 0.45 -1.6
1,464,622 - Psyr_1296 0.45 +1.2
1,464,622 - +1.2
1,464,698 + +0.2
1,464,698 + Psyr_1296 0.54 +0.4
1,464,698 + Psyr_1296 0.54 -1.1
1,464,698 + Psyr_1296 0.54 +0.1
1,464,699 - Psyr_1296 0.54 +0.7
1,464,699 - Psyr_1296 0.54 -1.1
1,464,699 - Psyr_1296 0.54 +0.9
1,464,699 - Psyr_1296 0.54 -1.3
1,464,699 - Psyr_1296 0.54 -0.8
1,464,699 - Psyr_1296 0.54 -2.0
1,464,699 - Psyr_1296 0.54 -0.1
1,464,699 - Psyr_1296 0.54 -0.3
1,464,699 - Psyr_1296 0.54 +0.7
1,464,699 - Psyr_1296 0.54 +0.1
1,464,702 + Psyr_1296 0.54 -0.5
1,464,703 - Psyr_1296 0.54 +0.6
1,464,734 + Psyr_1296 0.58 +0.2
1,464,734 + Psyr_1296 0.58 +0.2
1,464,735 - Psyr_1296 0.58 -0.4
1,464,897 + Psyr_1296 0.77 +0.1
1,465,235 + -1.9
1,465,244 + -1.9
1,465,244 + +0.6
1,465,244 + -0.9
1,465,244 + -0.0
1,465,244 + +1.2
1,465,244 + -0.6
1,465,244 + -0.2
1,465,244 + +0.4
1,465,244 + -0.3
1,465,244 + +1.0
1,465,244 + -0.5
1,465,244 + -0.8
1,465,244 + -1.4
1,465,244 + -0.5
1,465,244 + -0.2
1,465,244 + -1.9
1,465,244 + -0.5
1,465,244 + -1.1
1,465,244 + -0.2
1,465,244 + +0.1
1,465,244 + -1.8
1,465,244 + -0.5
1,465,244 + +0.1
1,465,245 - -0.6
1,465,245 - -2.1
1,465,245 - +0.2
1,465,245 - -2.0
1,465,245 - -1.5
1,465,245 - -1.3
1,465,245 - +0.7
1,465,245 - +1.0
1,465,245 - -1.9
1,465,245 - +2.2
1,465,245 - +1.0
1,465,245 - -1.0
1,465,245 - +2.2
1,465,245 - +0.2
1,465,245 - +0.6
1,465,245 - +0.7
1,465,245 - -0.8
1,465,248 + -0.8
1,465,248 + +1.5
1,465,248 + +0.2
1,465,248 + +1.1
1,465,249 - +0.8
1,465,249 - -1.3
1,465,376 + Psyr_1297 0.19 -1.6
1,465,376 + Psyr_1297 0.19 -1.0
1,465,376 + Psyr_1297 0.19 -0.6
1,465,377 - Psyr_1297 0.19 -1.5
1,465,377 - Psyr_1297 0.19 -0.6
1,465,411 - Psyr_1297 0.24 +0.4
1,465,411 - Psyr_1297 0.24 +0.4
1,465,527 + Psyr_1297 0.41 -1.6
1,465,527 + Psyr_1297 0.41 -0.3
1,465,528 - Psyr_1297 0.41 +3.2
1,465,528 - Psyr_1297 0.41 +2.2
1,465,539 + Psyr_1297 0.43 -0.4
1,465,539 + Psyr_1297 0.43 +0.2
1,465,539 + Psyr_1297 0.43 -0.8
1,465,540 - Psyr_1297 0.43 -1.3
1,465,540 - Psyr_1297 0.43 -0.8
1,465,540 - Psyr_1297 0.43 -1.0
1,465,540 - Psyr_1297 0.43 +1.2
1,466,069 - +1.2
1,466,162 + +0.2
1,466,293 + Psyr_1298 0.17 +1.5
1,466,293 + Psyr_1298 0.17 +0.7
1,466,294 - Psyr_1298 0.18 +0.7
1,466,332 - Psyr_1298 0.20 +0.4
1,466,417 + Psyr_1298 0.25 -0.8
1,466,527 - Psyr_1298 0.31 -1.0
1,466,527 - Psyr_1298 0.31 +0.3
1,466,569 + Psyr_1298 0.34 +0.2
1,466,569 + Psyr_1298 0.34 -0.1
1,466,570 - Psyr_1298 0.34 +0.4
1,466,573 + Psyr_1298 0.34 -0.3
1,466,573 + Psyr_1298 0.34 +1.2
1,466,573 + Psyr_1298 0.34 -0.8
1,466,574 - Psyr_1298 0.34 +0.7
1,466,574 - Psyr_1298 0.34 +0.2

Or see this region's nucleotide sequence