Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20460

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI
4,687,612	+				+0.4
4,687,614	+				-0.1
4,687,614	+				-0.3
4,687,614	+				+1.9
4,687,614	+				-0.3
4,687,620	-				-0.6
4,687,624	+				-1.4
4,687,639	-				-0.8
4,687,639	-				+1.7
4,687,639	-				-0.4
4,687,639	-				+0.6
4,687,647	-				-0.3
4,687,685	+				+0.4
4,687,685	+				-0.9
4,687,685	+				-0.8
4,687,685	+				+1.3
4,687,693	-				-0.0
4,687,719	+		HSERO_RS20455	0.14	+0.2
4,687,745	+		HSERO_RS20455	0.18	-0.4
4,687,774	+		HSERO_RS20455	0.22	-0.1
4,687,774	-		HSERO_RS20455	0.22	-0.9
4,687,782	-		HSERO_RS20455	0.24	-0.0
4,687,782	-		HSERO_RS20455	0.24	+0.3
4,687,782	-		HSERO_RS20455	0.24	-0.3
4,687,827	+		HSERO_RS20455	0.31	-0.9
4,687,827	+		HSERO_RS20455	0.31	-0.2
4,687,827	+		HSERO_RS20455	0.31	+0.4
4,687,833	-		HSERO_RS20455	0.32	+0.0
4,687,880	+		HSERO_RS20455	0.39	+0.2
4,687,882	-		HSERO_RS20455	0.39	+0.1
4,687,885	+		HSERO_RS20455	0.40	-0.3
4,687,885	+		HSERO_RS20455	0.40	-0.3
4,687,893	-		HSERO_RS20455	0.41	+0.3
4,687,893	-		HSERO_RS20455	0.41	+0.2
4,687,893	-		HSERO_RS20455	0.41	+0.1
4,687,903	+		HSERO_RS20455	0.43	+0.2
4,687,903	+		HSERO_RS20455	0.43	+0.7
4,687,913	+				-1.0
4,687,913	+		HSERO_RS20455	0.44	-0.3
4,687,921	-		HSERO_RS20455	0.45	-0.9
4,687,921	-		HSERO_RS20455	0.45	-0.0
4,687,931	+		HSERO_RS20455	0.47	-0.3
4,687,939	-		HSERO_RS20455	0.48	+0.5
4,687,991	+		HSERO_RS20455	0.56	+0.2
4,687,992	-		HSERO_RS20455	0.57	-0.2
4,688,035	+		HSERO_RS20455	0.63	-0.1
4,688,043	+		HSERO_RS20455	0.65	+0.4
4,688,043	+		HSERO_RS20455	0.65	-0.2
4,688,043	-		HSERO_RS20455	0.65	-1.0
4,688,045	-		HSERO_RS20455	0.65	-0.9
4,688,050	+		HSERO_RS20455	0.66	+0.5
4,688,051	-		HSERO_RS20455	0.66	-0.3
4,688,051	-		HSERO_RS20455	0.66	-0.4
4,688,051	-		HSERO_RS20455	0.66	-0.8
4,688,051	-		HSERO_RS20455	0.66	+0.1
4,688,088	+		HSERO_RS20455	0.72	-0.3
4,688,121	+		HSERO_RS20455	0.77	-0.7
4,688,166	+		HSERO_RS20455	0.84	+0.1
4,688,166	+		HSERO_RS20455	0.84	-0.1
4,688,171	+		HSERO_RS20455	0.85	-1.2
4,688,171	+		HSERO_RS20455	0.85	-0.2
4,688,171	+		HSERO_RS20455	0.85	+0.6
4,688,174	-		HSERO_RS20455	0.85	+0.3
4,688,193	+		HSERO_RS20455	0.88	-0.0
4,688,207	+				+0.4
4,688,207	+				-0.7
4,688,207	+				+1.0
4,688,207	+				-0.0
4,688,215	-				+0.3
4,688,244	-				-0.7
4,688,299	+				+0.6
4,688,307	-				+0.0
4,688,307	-				+0.5
4,688,307	-				-1.3
4,688,318	-				+0.0
4,688,318	-				+1.7
4,688,318	-				+0.4
4,688,321	+				-0.1
4,688,321	+				-2.4
4,688,321	+				-0.1
4,688,321	+				+0.5
4,688,321	+				-0.3
4,688,321	+				+1.1
4,688,321	+				-0.3
4,688,321	+				-0.9
4,688,329	-				-0.8
4,688,329	-				-0.7
4,688,329	-				-0.6
4,688,329	-				-1.3
4,688,329	-				-0.5
4,688,329	-				+0.6
4,688,329	-				-0.7
4,688,329	-				-0.6
4,688,329	-				-0.3
4,688,331	-				+1.0
4,688,367	-				-0.4
4,688,397	+				+0.4
4,688,399	-				+0.8
4,688,404	+				-0.6
4,688,405	-				-0.2
4,688,415	-				+1.0
4,688,415	-				+0.0
4,688,427	-				-0.3
4,688,475	+				+0.3
4,688,489	+				-1.1
4,688,489	+				-0.9
4,688,489	+				-1.4
4,688,489	+				-0.1
4,688,494	+				-1.1
4,688,497	-				-0.7
4,688,502	-				-0.1
4,688,512	-				+0.2
4,688,514	+				+0.2
4,688,540	+				-0.6
4,688,540	+				-0.0
4,688,540	-				-0.7
4,688,578	-				+0.4
4,688,583	+				+0.4
4,688,594	+				-2.1
4,688,594	+				-0.7
4,688,600	-				+0.4
4,688,602	+				-0.0
4,688,602	+				-0.2
4,688,610	-				-0.5
4,688,610	-				-0.0
4,688,647	+				+0.4
4,688,655	-				+0.3
4,688,660	+				-0.4
4,688,749	+				+0.3
4,688,749	+				-0.3
4,688,757	-				-0.2
4,688,821	-		HSERO_RS20460	0.12	-0.4
4,688,910	-		HSERO_RS20460	0.16	+0.1
4,688,939	-		HSERO_RS20460	0.17	+0.1
4,688,969	+		HSERO_RS20460	0.19	+0.0
4,688,969	+		HSERO_RS20460	0.19	+0.0
4,688,978	-		HSERO_RS20460	0.19	+0.6
4,688,980	+		HSERO_RS20460	0.19	+0.4
4,688,980	+		HSERO_RS20460	0.19	-0.4
4,688,980	+		HSERO_RS20460	0.19	+0.1
4,688,992	+		HSERO_RS20460	0.20	-0.6
4,688,993	+		HSERO_RS20460	0.20	+0.4
4,689,005	+		HSERO_RS20460	0.20	+1.3
4,689,011	-		HSERO_RS20460	0.21	-0.2
4,689,044	+		HSERO_RS20460	0.22	-0.2
4,689,078	+		HSERO_RS20460	0.24	+0.1
4,689,093	-		HSERO_RS20460	0.24	-0.5
4,689,117	+		HSERO_RS20460	0.26	+0.6
4,689,125	-		HSERO_RS20460	0.26	-0.2
4,689,148	-		HSERO_RS20460	0.27	-0.2
4,689,187	+		HSERO_RS20460	0.29	-0.3
4,689,206	-		HSERO_RS20460	0.30	-0.2
4,689,218	-		HSERO_RS20460	0.30	-0.5
4,689,223	-		HSERO_RS20460	0.30	-0.4
4,689,236	-		HSERO_RS20460	0.31	-2.6
4,689,296	-		HSERO_RS20460	0.34	-0.5
4,689,296	-		HSERO_RS20460	0.34	+1.1
4,689,333	-		HSERO_RS20460	0.36	-0.6
4,689,333	-		HSERO_RS20460	0.36	-1.2
4,689,383	-		HSERO_RS20460	0.38	-0.3
4,689,411	+		HSERO_RS20460	0.39	+3.7
4,689,420	+		HSERO_RS20460	0.40	-0.5
4,689,420	+		HSERO_RS20460	0.40	+0.2
4,689,420	+		HSERO_RS20460	0.40	-0.3
4,689,428	-		HSERO_RS20460	0.40	+0.3
4,689,461	-		HSERO_RS20460	0.42	-0.3
4,689,468	+		HSERO_RS20460	0.42	+0.5
4,689,500	+		HSERO_RS20460	0.43	-0.2
4,689,510	-		HSERO_RS20460	0.44	-0.0
4,689,595	+		HSERO_RS20460	0.48	-0.2
4,689,595	-		HSERO_RS20460	0.48	-0.4
4,689,595	-		HSERO_RS20460	0.48	-0.3
4,689,595	-		HSERO_RS20460	0.48	-0.9
4,689,603	-		HSERO_RS20460	0.48	-0.6
4,689,605	+		HSERO_RS20460	0.48	-0.2
4,689,605	+		HSERO_RS20460	0.48	+0.4
4,689,605	+		HSERO_RS20460	0.48	-0.9
4,689,658	-		HSERO_RS20460	0.51	-0.6
4,689,728	+		HSERO_RS20460	0.54	+0.1
4,689,731	-		HSERO_RS20460	0.54	-0.4
4,689,736	-		HSERO_RS20460	0.54	-0.4
4,689,793	-		HSERO_RS20460	0.57	-0.4
4,689,798	-		HSERO_RS20460	0.57	-0.1
4,689,814	+		HSERO_RS20460	0.58	-0.9
4,689,824	+		HSERO_RS20460	0.58	+0.0
4,689,849	-		HSERO_RS20460	0.60	+0.0
4,689,851	+		HSERO_RS20460	0.60	-0.4
4,689,904	+		HSERO_RS20460	0.62	-0.5
4,689,915	+				+0.4
4,689,956	+		HSERO_RS20460	0.65	+1.1
4,689,978	-		HSERO_RS20460	0.66	+0.0
4,690,021	-		HSERO_RS20460	0.68	+0.2
4,690,034	+		HSERO_RS20460	0.68	-0.7
4,690,088	-		HSERO_RS20460	0.71	-1.7
4,690,150	+		HSERO_RS20460	0.74	-0.2
4,690,248	-		HSERO_RS20460	0.78	-1.1
4,690,253	+		HSERO_RS20460	0.78	-0.1
4,690,259	-		HSERO_RS20460	0.79	-0.0
4,690,264	+		HSERO_RS20460	0.79	-0.1
4,690,290	+		HSERO_RS20460	0.80	-0.4
4,690,290	+		HSERO_RS20460	0.80	+0.1
4,690,309	+		HSERO_RS20460	0.81	-0.0
4,690,319	+		HSERO_RS20460	0.82	+0.1
4,690,325	-				+0.9
4,690,476	-		HSERO_RS20460	0.89	-0.2
4,690,499	+		HSERO_RS20460	0.90	+0.2
4,690,499	+		HSERO_RS20460	0.90	+0.2
4,690,499	+		HSERO_RS20460	0.90	+0.3
4,690,499	+		HSERO_RS20460	0.90	-0.0
4,690,499	+		HSERO_RS20460	0.90	-0.6
4,690,507	-				+0.1
4,690,525	+				+1.1
4,690,553	-				+2.6
4,690,553	-				+1.0
4,690,558	-				-0.7
4,690,577	-				-0.4
4,690,626	-				-0.3
4,690,665	-				-0.4
4,690,817	+				-0.4
4,690,820	-				+2.1
4,690,822	+				-2.6
4,690,837	+				+0.6
4,690,858	-				+0.3
4,690,948	-				-0.8
4,690,953	-				-0.8
4,691,062	+		HSERO_RS20465	0.21	-0.9
4,691,062	+		HSERO_RS20465	0.21	-0.2
4,691,063	-		HSERO_RS20465	0.21	+0.2
4,691,070	-		HSERO_RS20465	0.22	+0.6
4,691,078	+		HSERO_RS20465	0.23	-0.8
4,691,135	-		HSERO_RS20465	0.28	+0.0
4,691,145	-		HSERO_RS20465	0.29	-0.8
4,691,145	-		HSERO_RS20465	0.29	-0.1
4,691,158	+		HSERO_RS20465	0.31	+0.6
4,691,160	-		HSERO_RS20465	0.31	+0.4
4,691,177	-		HSERO_RS20465	0.33	+1.2
4,691,194	+		HSERO_RS20465	0.35	-0.5
4,691,202	-		HSERO_RS20465	0.35	+0.3
4,691,212	+		HSERO_RS20465	0.36	+0.2
4,691,220	-		HSERO_RS20465	0.37	+0.2
4,691,220	-		HSERO_RS20465	0.37	-0.1
4,691,220	-		HSERO_RS20465	0.37	-0.1
4,691,220	-		HSERO_RS20465	0.37	-0.2
4,691,231	+		HSERO_RS20465	0.38	-0.1
4,691,300	+		HSERO_RS20465	0.46	+3.3
4,691,304	+		HSERO_RS20465	0.46	+0.0
4,691,383	-		HSERO_RS20465	0.54	-1.3
4,691,417	+		HSERO_RS20465	0.58	+1.0
4,691,424	+				-0.2
4,691,459	-		HSERO_RS20465	0.62	+1.6
4,691,503	+		HSERO_RS20465	0.67	+0.4
4,691,511	-		HSERO_RS20465	0.68	-0.5
4,691,579	-		HSERO_RS20465	0.75	+0.5
4,691,638	+		HSERO_RS20465	0.81	+0.2
4,691,638	+		HSERO_RS20465	0.81	+0.0
4,691,655	+		HSERO_RS20465	0.83	-0.4