Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17860 and HSERO_RS17865 are separated by 305 nucleotides HSERO_RS17865 and HSERO_RS17870 are separated by 137 nucleotides
HSERO_RS17860: HSERO_RS17860 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 4,104,828 to 4,105,511
_RS17860
HSERO_RS17865: HSERO_RS17865 - hypothetical protein, at 4,105,817 to 4,107,628
_RS17865
HSERO_RS17870: HSERO_RS17870 - glucokinase, at 4,107,766 to 4,108,767
_RS17870
Position (kb) 4105
4106
4107
4108 Strain fitness (log2 ratio) -1
0
1 at 4104.935 kb on - strand at 4104.937 kb on + strand, within HSERO_RS17860 at 4104.937 kb on + strand, within HSERO_RS17860 at 4104.988 kb on + strand, within HSERO_RS17860 at 4105.084 kb on + strand, within HSERO_RS17860 at 4105.120 kb on + strand, within HSERO_RS17860 at 4105.120 kb on - strand, within HSERO_RS17860 at 4105.121 kb on - strand, within HSERO_RS17860 at 4105.257 kb on - strand, within HSERO_RS17860 at 4105.257 kb on - strand, within HSERO_RS17860 at 4105.257 kb on - strand, within HSERO_RS17860 at 4105.257 kb on - strand, within HSERO_RS17860 at 4105.329 kb on + strand, within HSERO_RS17860 at 4105.419 kb on - strand, within HSERO_RS17860 at 4105.434 kb on - strand, within HSERO_RS17860 at 4105.693 kb on + strand at 4105.797 kb on + strand at 4105.836 kb on - strand at 4105.878 kb on - strand at 4105.892 kb on - strand at 4106.157 kb on - strand, within HSERO_RS17865 at 4106.201 kb on + strand, within HSERO_RS17865 at 4106.257 kb on + strand, within HSERO_RS17865 at 4106.400 kb on + strand, within HSERO_RS17865 at 4106.752 kb on - strand, within HSERO_RS17865 at 4106.884 kb on - strand, within HSERO_RS17865 at 4107.100 kb on - strand, within HSERO_RS17865 at 4107.181 kb on - strand, within HSERO_RS17865 at 4107.181 kb on - strand, within HSERO_RS17865 at 4107.204 kb on - strand, within HSERO_RS17865 at 4107.324 kb on + strand, within HSERO_RS17865 at 4107.352 kb on - strand, within HSERO_RS17865 at 4107.665 kb on + strand at 4107.689 kb on - strand at 4107.756 kb on + strand at 4107.895 kb on - strand, within HSERO_RS17870 at 4107.910 kb on - strand, within HSERO_RS17870 at 4107.939 kb on - strand, within HSERO_RS17870 at 4107.979 kb on - strand, within HSERO_RS17870 at 4107.992 kb on - strand, within HSERO_RS17870 at 4108.003 kb on - strand at 4108.113 kb on + strand, within HSERO_RS17870 at 4108.121 kb on - strand, within HSERO_RS17870 at 4108.145 kb on + strand, within HSERO_RS17870 at 4108.395 kb on - strand, within HSERO_RS17870 at 4108.437 kb on + strand, within HSERO_RS17870 at 4108.521 kb on + strand, within HSERO_RS17870 at 4108.534 kb on - strand, within HSERO_RS17870
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,104,935 - +0.9 4,104,937 + HSERO_RS17860 0.16 -1.5 4,104,937 + HSERO_RS17860 0.16 +0.2 4,104,988 + HSERO_RS17860 0.23 +1.0 4,105,084 + HSERO_RS17860 0.37 -0.3 4,105,120 + HSERO_RS17860 0.43 +0.2 4,105,120 - HSERO_RS17860 0.43 +1.1 4,105,121 - HSERO_RS17860 0.43 +0.8 4,105,257 - HSERO_RS17860 0.63 +0.3 4,105,257 - HSERO_RS17860 0.63 +0.5 4,105,257 - HSERO_RS17860 0.63 +0.0 4,105,257 - HSERO_RS17860 0.63 +0.5 4,105,329 + HSERO_RS17860 0.73 -0.3 4,105,419 - HSERO_RS17860 0.86 -1.6 4,105,434 - HSERO_RS17860 0.89 +0.4 4,105,693 + +0.9 4,105,797 + +0.6 4,105,836 - -0.5 4,105,878 - -0.0 4,105,892 - -0.0 4,106,157 - HSERO_RS17865 0.19 +0.2 4,106,201 + HSERO_RS17865 0.21 +1.1 4,106,257 + HSERO_RS17865 0.24 +0.1 4,106,400 + HSERO_RS17865 0.32 -0.3 4,106,752 - HSERO_RS17865 0.52 -0.1 4,106,884 - HSERO_RS17865 0.59 +0.5 4,107,100 - HSERO_RS17865 0.71 +1.1 4,107,181 - HSERO_RS17865 0.75 +0.7 4,107,181 - HSERO_RS17865 0.75 +1.6 4,107,204 - HSERO_RS17865 0.77 +0.5 4,107,324 + HSERO_RS17865 0.83 +0.5 4,107,352 - HSERO_RS17865 0.85 +0.5 4,107,665 + +0.1 4,107,689 - +0.0 4,107,756 + -0.4 4,107,895 - HSERO_RS17870 0.13 +0.7 4,107,910 - HSERO_RS17870 0.14 +0.2 4,107,939 - HSERO_RS17870 0.17 +0.4 4,107,979 - HSERO_RS17870 0.21 +0.6 4,107,992 - HSERO_RS17870 0.23 +0.6 4,108,003 - +1.3 4,108,113 + HSERO_RS17870 0.35 +0.3 4,108,121 - HSERO_RS17870 0.35 +0.4 4,108,145 + HSERO_RS17870 0.38 +0.6 4,108,395 - HSERO_RS17870 0.63 -0.0 4,108,437 + HSERO_RS17870 0.67 -0.1 4,108,521 + HSERO_RS17870 0.75 +0.2 4,108,534 - HSERO_RS17870 0.77 -0.0
Or see this region's nucleotide sequence