Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16335

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS16330 and HSERO_RS16335 are separated by 174 nucleotidesHSERO_RS16335 and HSERO_RS16340 are separated by 40 nucleotidesHSERO_RS16340 and HSERO_RS16345 are separated by 353 nucleotides HSERO_RS16330: HSERO_RS16330 - xanthine/CO dehydrogenase maturation protein, at 3,736,806 to 3,737,894 _RS16330 HSERO_RS16335: HSERO_RS16335 - guanine deaminase, at 3,738,069 to 3,739,367 _RS16335 HSERO_RS16340: HSERO_RS16340 - transcriptional regulator, at 3,739,408 to 3,740,010 _RS16340 HSERO_RS16345: HSERO_RS16345 - multidrug transporter, at 3,740,364 to 3,741,800 _RS16345 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -1 0 1 2at 3737.149 kb on + strand, within HSERO_RS16330at 3737.159 kb on + strand, within HSERO_RS16330at 3737.159 kb on + strand, within HSERO_RS16330at 3737.159 kb on + strand, within HSERO_RS16330at 3737.159 kb on + strand, within HSERO_RS16330at 3737.159 kb on + strand, within HSERO_RS16330at 3737.186 kb on - strand, within HSERO_RS16330at 3737.455 kb on - strand, within HSERO_RS16330at 3737.993 kb on + strandat 3738.151 kb on + strandat 3738.342 kb on + strand, within HSERO_RS16335at 3738.361 kb on + strand, within HSERO_RS16335at 3738.402 kb on - strand, within HSERO_RS16335at 3738.406 kb on + strand, within HSERO_RS16335at 3738.465 kb on + strand, within HSERO_RS16335at 3738.523 kb on + strand, within HSERO_RS16335at 3738.750 kb on + strand, within HSERO_RS16335at 3738.753 kb on - strand, within HSERO_RS16335at 3738.753 kb on - strand, within HSERO_RS16335at 3738.773 kb on - strandat 3738.800 kb on + strand, within HSERO_RS16335at 3738.813 kb on - strand, within HSERO_RS16335at 3738.848 kb on - strand, within HSERO_RS16335at 3738.949 kb on - strand, within HSERO_RS16335at 3739.015 kb on + strand, within HSERO_RS16335at 3739.186 kb on + strand, within HSERO_RS16335at 3739.336 kb on + strandat 3739.406 kb on + strandat 3739.577 kb on + strand, within HSERO_RS16340at 3739.585 kb on - strand, within HSERO_RS16340at 3739.605 kb on - strand, within HSERO_RS16340at 3739.664 kb on + strand, within HSERO_RS16340at 3739.665 kb on + strand, within HSERO_RS16340at 3739.793 kb on + strand, within HSERO_RS16340at 3739.795 kb on + strand, within HSERO_RS16340at 3739.857 kb on - strand, within HSERO_RS16340at 3739.873 kb on + strand, within HSERO_RS16340at 3740.023 kb on + strandat 3740.244 kb on - strandat 3740.266 kb on + strandat 3740.279 kb on - strandat 3740.328 kb on + strandat 3740.328 kb on + strandat 3740.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,737,149 + HSERO_RS16330 0.31 +0.3
3,737,159 + HSERO_RS16330 0.32 +0.3
3,737,159 + HSERO_RS16330 0.32 +0.6
3,737,159 + HSERO_RS16330 0.32 +1.2
3,737,159 + HSERO_RS16330 0.32 +0.6
3,737,159 + HSERO_RS16330 0.32 -0.3
3,737,186 - HSERO_RS16330 0.35 +1.1
3,737,455 - HSERO_RS16330 0.60 -1.5
3,737,993 + -0.7
3,738,151 + +1.8
3,738,342 + HSERO_RS16335 0.21 +0.8
3,738,361 + HSERO_RS16335 0.22 +0.2
3,738,402 - HSERO_RS16335 0.26 -0.1
3,738,406 + HSERO_RS16335 0.26 -0.1
3,738,465 + HSERO_RS16335 0.30 +0.3
3,738,523 + HSERO_RS16335 0.35 -0.4
3,738,750 + HSERO_RS16335 0.52 +0.6
3,738,753 - HSERO_RS16335 0.53 -0.0
3,738,753 - HSERO_RS16335 0.53 -0.9
3,738,773 - -1.4
3,738,800 + HSERO_RS16335 0.56 -0.4
3,738,813 - HSERO_RS16335 0.57 +0.4
3,738,848 - HSERO_RS16335 0.60 +0.5
3,738,949 - HSERO_RS16335 0.68 -0.4
3,739,015 + HSERO_RS16335 0.73 -0.6
3,739,186 + HSERO_RS16335 0.86 +1.3
3,739,336 + -0.0
3,739,406 + +0.9
3,739,577 + HSERO_RS16340 0.28 +0.4
3,739,585 - HSERO_RS16340 0.29 +0.6
3,739,605 - HSERO_RS16340 0.33 +0.4
3,739,664 + HSERO_RS16340 0.42 -0.1
3,739,665 + HSERO_RS16340 0.43 -0.2
3,739,793 + HSERO_RS16340 0.64 +1.2
3,739,795 + HSERO_RS16340 0.64 +0.2
3,739,857 - HSERO_RS16340 0.74 -0.1
3,739,873 + HSERO_RS16340 0.77 +0.2
3,740,023 + +0.1
3,740,244 - +0.4
3,740,266 + +0.9
3,740,279 - -0.1
3,740,328 + -0.9
3,740,328 + +0.6
3,740,333 + +0.1

Or see this region's nucleotide sequence