Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03200 and HSERO_RS03205 are separated by 93 nucleotides HSERO_RS03205 and HSERO_RS03210 are separated by 10 nucleotides HSERO_RS03210 and HSERO_RS03215 are separated by 20 nucleotides
HSERO_RS03200: HSERO_RS03200 - IMP dehydrogenase, at 700,133 to 703,519
_RS03200
HSERO_RS03205: HSERO_RS03205 - hypothetical protein, at 703,613 to 706,114
_RS03205
HSERO_RS03210: HSERO_RS03210 - transglutaminase, at 706,125 to 707,060
_RS03210
HSERO_RS03215: HSERO_RS03215 - sodium:solute symporter, at 707,081 to 709,132
_RS03215
Position (kb) 703
704
705
706
707 Strain fitness (log2 ratio) -1
0
1
2
3 at 702.720 kb on + strand, within HSERO_RS03200 at 702.720 kb on + strand, within HSERO_RS03200 at 702.720 kb on + strand, within HSERO_RS03200 at 702.735 kb on + strand, within HSERO_RS03200 at 702.743 kb on - strand, within HSERO_RS03200 at 702.789 kb on - strand at 703.034 kb on + strand, within HSERO_RS03200 at 703.047 kb on + strand, within HSERO_RS03200 at 703.263 kb on + strand at 703.290 kb on + strand at 703.298 kb on - strand at 703.510 kb on - strand at 703.560 kb on + strand at 703.579 kb on - strand at 703.709 kb on - strand at 703.812 kb on - strand at 703.824 kb on - strand at 703.859 kb on + strand at 703.877 kb on - strand, within HSERO_RS03205 at 704.100 kb on + strand, within HSERO_RS03205 at 704.200 kb on - strand, within HSERO_RS03205 at 704.336 kb on - strand, within HSERO_RS03205 at 704.512 kb on + strand at 704.817 kb on - strand, within HSERO_RS03205 at 704.844 kb on - strand, within HSERO_RS03205 at 705.034 kb on + strand, within HSERO_RS03205 at 705.086 kb on - strand, within HSERO_RS03205 at 705.112 kb on - strand, within HSERO_RS03205 at 705.164 kb on + strand at 705.192 kb on + strand, within HSERO_RS03205 at 705.385 kb on + strand, within HSERO_RS03205 at 705.514 kb on - strand, within HSERO_RS03205 at 705.732 kb on - strand, within HSERO_RS03205 at 705.800 kb on + strand, within HSERO_RS03205 at 706.108 kb on + strand at 706.125 kb on - strand at 706.139 kb on + strand at 706.203 kb on + strand at 706.428 kb on - strand, within HSERO_RS03210 at 706.431 kb on + strand, within HSERO_RS03210 at 706.583 kb on - strand, within HSERO_RS03210 at 706.687 kb on + strand, within HSERO_RS03210 at 706.762 kb on + strand, within HSERO_RS03210 at 706.843 kb on + strand, within HSERO_RS03210 at 706.913 kb on - strand, within HSERO_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 702,720 + HSERO_RS03200 0.76 +0.1 702,720 + HSERO_RS03200 0.76 -0.9 702,720 + HSERO_RS03200 0.76 +0.4 702,735 + HSERO_RS03200 0.77 -0.2 702,743 - HSERO_RS03200 0.77 +0.3 702,789 - -1.0 703,034 + HSERO_RS03200 0.86 -0.0 703,047 + HSERO_RS03200 0.86 +0.1 703,263 + +0.2 703,290 + -0.0 703,298 - +2.5 703,510 - +0.9 703,560 + +0.3 703,579 - +0.2 703,709 - -0.7 703,812 - -0.1 703,824 - +0.0 703,859 + -0.6 703,877 - HSERO_RS03205 0.11 -0.6 704,100 + HSERO_RS03205 0.19 +0.4 704,200 - HSERO_RS03205 0.23 -0.8 704,336 - HSERO_RS03205 0.29 +0.0 704,512 + -1.4 704,817 - HSERO_RS03205 0.48 -0.6 704,844 - HSERO_RS03205 0.49 +0.4 705,034 + HSERO_RS03205 0.57 +2.8 705,086 - HSERO_RS03205 0.59 +0.1 705,112 - HSERO_RS03205 0.60 +0.2 705,164 + +0.8 705,192 + HSERO_RS03205 0.63 -0.1 705,385 + HSERO_RS03205 0.71 +0.5 705,514 - HSERO_RS03205 0.76 +0.0 705,732 - HSERO_RS03205 0.85 +0.5 705,800 + HSERO_RS03205 0.87 +1.5 706,108 + -1.2 706,125 - -1.3 706,139 + -0.3 706,203 + -1.5 706,428 - HSERO_RS03210 0.32 +0.3 706,431 + HSERO_RS03210 0.33 -0.0 706,583 - HSERO_RS03210 0.49 +0.8 706,687 + HSERO_RS03210 0.60 -0.4 706,762 + HSERO_RS03210 0.68 -0.2 706,843 + HSERO_RS03210 0.77 -0.6 706,913 - HSERO_RS03210 0.84 -0.6
Or see this region's nucleotide sequence