Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02215 and HSERO_RS02220 are separated by 64 nucleotides HSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotides HSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotides
HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893
_RS02215
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911
_RS02225
HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516
_RS02230
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -1
0
1
2 at 484.316 kb on - strand, within HSERO_RS02215 at 484.940 kb on - strand at 484.990 kb on + strand at 485.084 kb on - strand at 485.276 kb on - strand, within HSERO_RS02220 at 485.276 kb on - strand, within HSERO_RS02220 at 485.362 kb on + strand, within HSERO_RS02220 at 485.367 kb on + strand, within HSERO_RS02220 at 485.588 kb on + strand, within HSERO_RS02220 at 485.598 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.831 kb on - strand, within HSERO_RS02220 at 485.962 kb on + strand at 486.038 kb on - strand, within HSERO_RS02220 at 486.043 kb on - strand, within HSERO_RS02220 at 486.099 kb on + strand, within HSERO_RS02220 at 486.291 kb on + strand at 486.342 kb on - strand at 486.641 kb on + strand, within HSERO_RS02225 at 486.649 kb on - strand, within HSERO_RS02225 at 486.727 kb on + strand, within HSERO_RS02225 at 486.734 kb on - strand, within HSERO_RS02225 at 486.780 kb on + strand, within HSERO_RS02225 at 486.825 kb on - strand, within HSERO_RS02225 at 486.970 kb on - strand at 487.010 kb on + strand at 487.285 kb on + strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.426 kb on - strand, within HSERO_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 484,316 - HSERO_RS02215 0.60 +0.5 484,940 - +0.7 484,990 + +0.4 485,084 - +1.2 485,276 - HSERO_RS02220 0.22 +0.1 485,276 - HSERO_RS02220 0.22 -0.1 485,362 + HSERO_RS02220 0.27 +0.1 485,367 + HSERO_RS02220 0.28 +0.3 485,588 + HSERO_RS02220 0.43 +1.3 485,598 + HSERO_RS02220 0.43 -0.3 485,620 + HSERO_RS02220 0.45 -0.2 485,620 + HSERO_RS02220 0.45 +1.7 485,620 + HSERO_RS02220 0.45 -0.0 485,628 - HSERO_RS02220 0.45 +1.0 485,628 - HSERO_RS02220 0.45 +0.2 485,831 - HSERO_RS02220 0.59 -1.2 485,962 + -0.2 486,038 - HSERO_RS02220 0.73 +0.4 486,043 - HSERO_RS02220 0.74 +1.1 486,099 + HSERO_RS02220 0.77 -1.1 486,291 + +2.0 486,342 - -0.3 486,641 + HSERO_RS02225 0.41 -0.3 486,649 - HSERO_RS02225 0.43 -1.2 486,727 + HSERO_RS02225 0.60 -0.2 486,734 - HSERO_RS02225 0.61 +0.2 486,780 + HSERO_RS02225 0.71 -1.3 486,825 - HSERO_RS02225 0.81 +0.0 486,970 - -0.1 487,010 + +1.2 487,285 + HSERO_RS02230 0.21 +0.7 487,291 - HSERO_RS02230 0.22 +0.0 487,291 - HSERO_RS02230 0.22 +0.6 487,426 - HSERO_RS02230 0.30 +0.5
Or see this region's nucleotide sequence