Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02065 and HSERO_RS02070 are separated by 507 nucleotides HSERO_RS02070 and HSERO_RS02075 overlap by 11 nucleotides HSERO_RS02075 and HSERO_RS02080 are separated by 70 nucleotides
HSERO_RS02065: HSERO_RS02065 - hypothetical protein, at 450,815 to 451,753
_RS02065
HSERO_RS02070: HSERO_RS02070 - deoxyribodipyrimidine photolyase, at 452,261 to 453,463
_RS02070
HSERO_RS02075: HSERO_RS02075 - hypothetical protein, at 453,453 to 453,866
_RS02075
HSERO_RS02080: HSERO_RS02080 - Holliday junction resolvase, at 453,937 to 454,479
_RS02080
Position (kb) 452
453
454 Strain fitness (log2 ratio) -1
0
1 at 451.274 kb on - strand, within HSERO_RS02065 at 451.338 kb on - strand, within HSERO_RS02065 at 451.474 kb on + strand, within HSERO_RS02065 at 451.650 kb on - strand, within HSERO_RS02065 at 452.126 kb on + strand at 452.126 kb on + strand at 452.221 kb on - strand at 452.608 kb on - strand, within HSERO_RS02070 at 452.774 kb on + strand, within HSERO_RS02070 at 452.869 kb on - strand, within HSERO_RS02070 at 452.973 kb on + strand, within HSERO_RS02070 at 453.009 kb on + strand, within HSERO_RS02070 at 453.251 kb on + strand, within HSERO_RS02070 at 453.328 kb on - strand, within HSERO_RS02070 at 453.366 kb on - strand at 453.443 kb on + strand at 453.606 kb on + strand, within HSERO_RS02075 at 453.702 kb on + strand, within HSERO_RS02075 at 453.755 kb on + strand, within HSERO_RS02075 at 453.814 kb on + strand, within HSERO_RS02075 at 453.875 kb on - strand at 454.001 kb on + strand, within HSERO_RS02080 at 454.373 kb on - strand, within HSERO_RS02080
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 451,274 - HSERO_RS02065 0.49 +1.5 451,338 - HSERO_RS02065 0.56 +0.7 451,474 + HSERO_RS02065 0.70 +0.2 451,650 - HSERO_RS02065 0.89 +0.5 452,126 + +1.0 452,126 + -0.1 452,221 - +0.2 452,608 - HSERO_RS02070 0.29 -0.4 452,774 + HSERO_RS02070 0.43 +1.7 452,869 - HSERO_RS02070 0.51 +0.1 452,973 + HSERO_RS02070 0.59 +0.2 453,009 + HSERO_RS02070 0.62 +1.7 453,251 + HSERO_RS02070 0.82 +0.8 453,328 - HSERO_RS02070 0.89 -0.8 453,366 - +0.7 453,443 + -1.2 453,606 + HSERO_RS02075 0.37 +0.8 453,702 + HSERO_RS02075 0.60 -0.0 453,755 + HSERO_RS02075 0.73 +1.0 453,814 + HSERO_RS02075 0.87 +0.7 453,875 - +0.3 454,001 + HSERO_RS02080 0.12 -0.4 454,373 - HSERO_RS02080 0.80 -1.4
Or see this region's nucleotide sequence