Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18985

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18980 and ABZR87_RS18985 are separated by 64 nucleotidesABZR87_RS18985 and ABZR87_RS18990 are separated by 224 nucleotides ABZR87_RS18980: ABZR87_RS18980 - methyl-accepting chemotaxis protein, at 615,249 to 616,817 _RS18980 ABZR87_RS18985: ABZR87_RS18985 - GGDEF and EAL domain-containing protein, at 616,882 to 618,324 _RS18985 ABZR87_RS18990: ABZR87_RS18990 - flagellar brake protein, at 618,549 to 619,454 _RS18990 Position (kb) 616 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3at 615.897 kb on + strand, within ABZR87_RS18980at 615.962 kb on + strand, within ABZR87_RS18980at 615.963 kb on - strand, within ABZR87_RS18980at 616.572 kb on - strand, within ABZR87_RS18980at 616.815 kb on + strandat 616.816 kb on - strandat 616.967 kb on + strandat 616.967 kb on + strandat 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.277 kb on + strand, within ABZR87_RS18985at 617.278 kb on - strand, within ABZR87_RS18985at 617.278 kb on - strand, within ABZR87_RS18985at 617.278 kb on - strand, within ABZR87_RS18985at 617.278 kb on - strand, within ABZR87_RS18985at 617.717 kb on + strand, within ABZR87_RS18985at 617.717 kb on + strand, within ABZR87_RS18985at 617.718 kb on - strand, within ABZR87_RS18985at 617.801 kb on + strand, within ABZR87_RS18985at 617.802 kb on - strand, within ABZR87_RS18985at 617.802 kb on - strand, within ABZR87_RS18985at 617.802 kb on - strand, within ABZR87_RS18985at 617.802 kb on - strand, within ABZR87_RS18985at 617.802 kb on - strand, within ABZR87_RS18985at 617.841 kb on - strand, within ABZR87_RS18985at 617.907 kb on + strand, within ABZR87_RS18985at 617.908 kb on - strand, within ABZR87_RS18985at 617.908 kb on - strand, within ABZR87_RS18985at 617.937 kb on - strand, within ABZR87_RS18985at 618.324 kb on + strandat 618.324 kb on + strandat 618.352 kb on + strandat 618.352 kb on + strandat 618.352 kb on + strandat 618.353 kb on - strandat 618.390 kb on + strandat 618.390 kb on + strandat 618.391 kb on - strandat 618.392 kb on + strandat 618.392 kb on + strandat 618.392 kb on + strandat 618.424 kb on - strandat 618.531 kb on - strandat 618.550 kb on + strandat 618.550 kb on + strandat 618.551 kb on - strandat 618.586 kb on + strandat 618.586 kb on + strandat 618.586 kb on + strandat 618.586 kb on + strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.647 kb on - strand, within ABZR87_RS18990at 618.647 kb on - strand, within ABZR87_RS18990at 618.653 kb on - strand, within ABZR87_RS18990at 618.653 kb on - strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.960 kb on + strand, within ABZR87_RS18990at 618.961 kb on - strand, within ABZR87_RS18990at 619.099 kb on + strand, within ABZR87_RS18990at 619.099 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.259 kb on + strand, within ABZR87_RS18990at 619.260 kb on - strand, within ABZR87_RS18990

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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615,897 + ABZR87_RS18980 0.41 +0.5
615,962 + ABZR87_RS18980 0.45 +1.0
615,963 - ABZR87_RS18980 0.46 +0.4
616,572 - ABZR87_RS18980 0.84 +0.4
616,815 + +0.1
616,816 - +0.0
616,967 + +1.3
616,967 + +2.6
617,277 + ABZR87_RS18985 0.27 +1.2
617,277 + ABZR87_RS18985 0.27 +1.3
617,277 + ABZR87_RS18985 0.27 +0.9
617,277 + ABZR87_RS18985 0.27 +1.8
617,277 + ABZR87_RS18985 0.27 +1.5
617,277 + ABZR87_RS18985 0.27 +2.2
617,277 + ABZR87_RS18985 0.27 +1.3
617,278 - ABZR87_RS18985 0.27 +1.6
617,278 - ABZR87_RS18985 0.27 +1.1
617,278 - ABZR87_RS18985 0.27 -0.1
617,278 - ABZR87_RS18985 0.27 +1.1
617,717 + ABZR87_RS18985 0.58 +1.3
617,717 + ABZR87_RS18985 0.58 +1.2
617,718 - ABZR87_RS18985 0.58 +1.3
617,801 + ABZR87_RS18985 0.64 +2.0
617,802 - ABZR87_RS18985 0.64 +2.1
617,802 - ABZR87_RS18985 0.64 +0.8
617,802 - ABZR87_RS18985 0.64 +2.7
617,802 - ABZR87_RS18985 0.64 +1.4
617,802 - ABZR87_RS18985 0.64 +1.3
617,841 - ABZR87_RS18985 0.66 +1.9
617,907 + ABZR87_RS18985 0.71 +0.6
617,908 - ABZR87_RS18985 0.71 +1.1
617,908 - ABZR87_RS18985 0.71 +1.8
617,937 - ABZR87_RS18985 0.73 +1.5
618,324 + +1.9
618,324 + +1.5
618,352 + +0.3
618,352 + +1.2
618,352 + +1.8
618,353 - -0.2
618,390 + +1.5
618,390 + +1.6
618,391 - -1.0
618,392 + +0.9
618,392 + +1.2
618,392 + +1.8
618,424 - +0.4
618,531 - -0.7
618,550 + +1.1
618,550 + +1.1
618,551 - -0.6
618,586 + +1.5
618,586 + +0.8
618,586 + +1.3
618,586 + +1.7
618,587 - -0.5
618,587 - -0.6
618,587 - -0.8
618,587 - +0.1
618,587 - -0.9
618,587 - -0.3
618,587 - -0.8
618,587 - -0.9
618,587 - +0.2
618,646 + ABZR87_RS18990 0.11 -0.2
618,646 + ABZR87_RS18990 0.11 +1.3
618,646 + ABZR87_RS18990 0.11 +0.8
618,646 + ABZR87_RS18990 0.11 +1.5
618,647 - ABZR87_RS18990 0.11 -0.6
618,647 - ABZR87_RS18990 0.11 -1.0
618,653 - ABZR87_RS18990 0.11 +0.0
618,653 - ABZR87_RS18990 0.11 -0.0
618,718 + ABZR87_RS18990 0.19 +2.8
618,718 + ABZR87_RS18990 0.19 +1.2
618,718 + ABZR87_RS18990 0.19 +2.0
618,718 + ABZR87_RS18990 0.19 +0.6
618,718 + ABZR87_RS18990 0.19 +1.8
618,719 - ABZR87_RS18990 0.19 +0.0
618,719 - ABZR87_RS18990 0.19 -1.2
618,719 - ABZR87_RS18990 0.19 -2.6
618,719 - ABZR87_RS18990 0.19 -0.1
618,940 + ABZR87_RS18990 0.43 +0.6
618,940 + ABZR87_RS18990 0.43 +0.5
618,940 + ABZR87_RS18990 0.43 +0.5
618,941 - ABZR87_RS18990 0.43 -0.2
618,941 - ABZR87_RS18990 0.43 -0.8
618,941 - ABZR87_RS18990 0.43 -0.0
618,941 - ABZR87_RS18990 0.43 -0.7
618,960 + ABZR87_RS18990 0.45 +0.9
618,961 - ABZR87_RS18990 0.45 -1.2
619,099 + ABZR87_RS18990 0.61 +0.9
619,099 + ABZR87_RS18990 0.61 +0.1
619,202 + ABZR87_RS18990 0.72 -0.2
619,202 + ABZR87_RS18990 0.72 +1.4
619,202 + ABZR87_RS18990 0.72 +1.2
619,203 - ABZR87_RS18990 0.72 +0.1
619,203 - ABZR87_RS18990 0.72 +0.0
619,203 - ABZR87_RS18990 0.72 -0.7
619,203 - ABZR87_RS18990 0.72 -0.4
619,203 - ABZR87_RS18990 0.72 -0.3
619,259 + ABZR87_RS18990 0.78 -0.5
619,260 - ABZR87_RS18990 0.78 -0.3

Or see this region's nucleotide sequence