Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17580

Experiment: Heptanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17575 and ABZR87_RS17580 are separated by 21 nucleotidesABZR87_RS17580 and ABZR87_RS17585 are separated by 259 nucleotides ABZR87_RS17575: ABZR87_RS17575 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 304,118 to 305,422 _RS17575 ABZR87_RS17580: ABZR87_RS17580 - amino acid permease, at 305,444 to 306,820 _RS17580 ABZR87_RS17585: ABZR87_RS17585 - alpha/beta hydrolase domain-containing protein, at 307,080 to 309,158 _RS17585 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1at 304.469 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.481 kb on + strand, within ABZR87_RS17575at 304.482 kb on - strand, within ABZR87_RS17575at 304.706 kb on + strand, within ABZR87_RS17575at 304.706 kb on + strand, within ABZR87_RS17575at 304.707 kb on - strand, within ABZR87_RS17575at 304.763 kb on + strand, within ABZR87_RS17575at 304.763 kb on + strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.764 kb on - strand, within ABZR87_RS17575at 304.874 kb on + strand, within ABZR87_RS17575at 304.874 kb on + strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.875 kb on - strand, within ABZR87_RS17575at 304.889 kb on + strand, within ABZR87_RS17575at 304.890 kb on - strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 304.916 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.141 kb on + strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.142 kb on - strand, within ABZR87_RS17575at 305.374 kb on + strandat 305.487 kb on - strandat 305.487 kb on - strandat 305.882 kb on + strand, within ABZR87_RS17580at 305.882 kb on + strand, within ABZR87_RS17580at 305.882 kb on + strand, within ABZR87_RS17580at 305.883 kb on - strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.886 kb on + strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 305.887 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.055 kb on - strand, within ABZR87_RS17580at 306.234 kb on + strand, within ABZR87_RS17580at 306.234 kb on + strand, within ABZR87_RS17580at 306.273 kb on + strand, within ABZR87_RS17580at 306.274 kb on - strand, within ABZR87_RS17580at 306.282 kb on + strand, within ABZR87_RS17580at 306.339 kb on + strand, within ABZR87_RS17580at 306.340 kb on - strand, within ABZR87_RS17580at 306.450 kb on + strand, within ABZR87_RS17580at 306.450 kb on + strand, within ABZR87_RS17580at 306.450 kb on + strand, within ABZR87_RS17580at 306.451 kb on - strand, within ABZR87_RS17580at 306.451 kb on - strand, within ABZR87_RS17580at 306.451 kb on - strand, within ABZR87_RS17580at 306.451 kb on - strand, within ABZR87_RS17580at 306.510 kb on + strand, within ABZR87_RS17580at 306.543 kb on + strand, within ABZR87_RS17580at 306.543 kb on + strand, within ABZR87_RS17580at 306.543 kb on + strand, within ABZR87_RS17580at 306.543 kb on + strand, within ABZR87_RS17580at 306.544 kb on - strand, within ABZR87_RS17580at 306.544 kb on - strand, within ABZR87_RS17580at 306.556 kb on - strand, within ABZR87_RS17580at 306.645 kb on + strand, within ABZR87_RS17580at 306.645 kb on + strand, within ABZR87_RS17580at 306.645 kb on + strand, within ABZR87_RS17580at 306.646 kb on - strand, within ABZR87_RS17580at 306.942 kb on + strandat 306.942 kb on + strandat 306.943 kb on - strandat 306.943 kb on - strandat 306.943 kb on - strandat 306.943 kb on - strandat 306.943 kb on - strandat 306.986 kb on + strandat 306.987 kb on - strandat 307.033 kb on - strandat 307.033 kb on - strandat 307.197 kb on + strandat 307.197 kb on + strandat 307.198 kb on - strandat 307.198 kb on - strandat 307.239 kb on + strandat 307.240 kb on - strandat 307.240 kb on - strandat 307.257 kb on + strandat 307.281 kb on - strandat 307.368 kb on + strand, within ABZR87_RS17585at 307.368 kb on + strand, within ABZR87_RS17585at 307.368 kb on + strand, within ABZR87_RS17585at 307.368 kb on + strand, within ABZR87_RS17585at 307.368 kb on + strand, within ABZR87_RS17585at 307.369 kb on - strand, within ABZR87_RS17585at 307.369 kb on - strand, within ABZR87_RS17585at 307.431 kb on + strand, within ABZR87_RS17585at 307.598 kb on + strand, within ABZR87_RS17585at 307.598 kb on + strand, within ABZR87_RS17585at 307.599 kb on - strand, within ABZR87_RS17585at 307.599 kb on - strand, within ABZR87_RS17585at 307.723 kb on - strand, within ABZR87_RS17585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
remove
304,469 + ABZR87_RS17575 0.27 -0.3
304,481 + ABZR87_RS17575 0.28 -0.6
304,481 + ABZR87_RS17575 0.28 +0.9
304,481 + ABZR87_RS17575 0.28 -0.6
304,481 + ABZR87_RS17575 0.28 -0.5
304,481 + ABZR87_RS17575 0.28 -0.4
304,482 - ABZR87_RS17575 0.28 -0.0
304,706 + ABZR87_RS17575 0.45 +0.3
304,706 + ABZR87_RS17575 0.45 -0.1
304,707 - ABZR87_RS17575 0.45 +0.6
304,763 + ABZR87_RS17575 0.49 -0.0
304,763 + ABZR87_RS17575 0.49 +0.3
304,764 - ABZR87_RS17575 0.50 +0.8
304,764 - ABZR87_RS17575 0.50 -0.1
304,764 - ABZR87_RS17575 0.50 +0.8
304,874 + ABZR87_RS17575 0.58 -0.3
304,874 + ABZR87_RS17575 0.58 +0.5
304,875 - ABZR87_RS17575 0.58 -0.2
304,875 - ABZR87_RS17575 0.58 +1.4
304,875 - ABZR87_RS17575 0.58 -0.1
304,889 + ABZR87_RS17575 0.59 -1.1
304,890 - ABZR87_RS17575 0.59 +0.3
304,916 + ABZR87_RS17575 0.61 -1.6
304,916 + ABZR87_RS17575 0.61 +0.3
304,916 + ABZR87_RS17575 0.61 -0.2
305,141 + ABZR87_RS17575 0.78 +0.9
305,141 + ABZR87_RS17575 0.78 -0.1
305,141 + ABZR87_RS17575 0.78 +0.2
305,141 + ABZR87_RS17575 0.78 -1.8
305,141 + ABZR87_RS17575 0.78 +0.0
305,141 + ABZR87_RS17575 0.78 +0.1
305,141 + ABZR87_RS17575 0.78 +0.2
305,141 + ABZR87_RS17575 0.78 -0.0
305,141 + ABZR87_RS17575 0.78 +0.0
305,142 - ABZR87_RS17575 0.78 +0.0
305,142 - ABZR87_RS17575 0.78 +0.7
305,142 - ABZR87_RS17575 0.78 -0.5
305,142 - ABZR87_RS17575 0.78 -0.4
305,374 + -0.8
305,487 - +0.4
305,487 - +0.0
305,882 + ABZR87_RS17580 0.32 +0.6
305,882 + ABZR87_RS17580 0.32 +0.9
305,882 + ABZR87_RS17580 0.32 -0.4
305,883 - ABZR87_RS17580 0.32 +1.1
305,886 + ABZR87_RS17580 0.32 +0.4
305,886 + ABZR87_RS17580 0.32 +0.0
305,886 + ABZR87_RS17580 0.32 +0.8
305,886 + ABZR87_RS17580 0.32 +0.7
305,886 + ABZR87_RS17580 0.32 +0.2
305,886 + ABZR87_RS17580 0.32 -0.9
305,887 - ABZR87_RS17580 0.32 +0.3
305,887 - ABZR87_RS17580 0.32 -0.3
305,887 - ABZR87_RS17580 0.32 +0.0
305,887 - ABZR87_RS17580 0.32 +0.1
305,887 - ABZR87_RS17580 0.32 -0.1
306,055 - ABZR87_RS17580 0.44 +0.5
306,055 - ABZR87_RS17580 0.44 +0.0
306,055 - ABZR87_RS17580 0.44 +1.3
306,234 + ABZR87_RS17580 0.57 +0.1
306,234 + ABZR87_RS17580 0.57 +0.5
306,273 + ABZR87_RS17580 0.60 +0.3
306,274 - ABZR87_RS17580 0.60 -0.1
306,282 + ABZR87_RS17580 0.61 +1.1
306,339 + ABZR87_RS17580 0.65 +0.8
306,340 - ABZR87_RS17580 0.65 +0.6
306,450 + ABZR87_RS17580 0.73 -2.6
306,450 + ABZR87_RS17580 0.73 +0.6
306,450 + ABZR87_RS17580 0.73 +0.3
306,451 - ABZR87_RS17580 0.73 -0.5
306,451 - ABZR87_RS17580 0.73 +0.3
306,451 - ABZR87_RS17580 0.73 +0.1
306,451 - ABZR87_RS17580 0.73 +0.4
306,510 + ABZR87_RS17580 0.77 +0.2
306,543 + ABZR87_RS17580 0.80 +0.7
306,543 + ABZR87_RS17580 0.80 -0.3
306,543 + ABZR87_RS17580 0.80 +0.7
306,543 + ABZR87_RS17580 0.80 +0.8
306,544 - ABZR87_RS17580 0.80 -0.5
306,544 - ABZR87_RS17580 0.80 -0.6
306,556 - ABZR87_RS17580 0.81 -0.3
306,645 + ABZR87_RS17580 0.87 -0.0
306,645 + ABZR87_RS17580 0.87 +0.7
306,645 + ABZR87_RS17580 0.87 +0.3
306,646 - ABZR87_RS17580 0.87 +0.1
306,942 + +0.3
306,942 + +0.5
306,943 - -0.2
306,943 - +0.3
306,943 - -0.2
306,943 - -0.0
306,943 - +0.4
306,986 + -0.2
306,987 - +0.1
307,033 - -1.1
307,033 - -0.0
307,197 + +0.1
307,197 + +0.0
307,198 - -0.2
307,198 - -0.3
307,239 + -0.2
307,240 - -0.7
307,240 - -0.6
307,257 + -0.2
307,281 - -0.9
307,368 + ABZR87_RS17585 0.14 +0.2
307,368 + ABZR87_RS17585 0.14 +0.2
307,368 + ABZR87_RS17585 0.14 -0.3
307,368 + ABZR87_RS17585 0.14 +0.4
307,368 + ABZR87_RS17585 0.14 +0.3
307,369 - ABZR87_RS17585 0.14 +0.2
307,369 - ABZR87_RS17585 0.14 -0.4
307,431 + ABZR87_RS17585 0.17 +0.7
307,598 + ABZR87_RS17585 0.25 +0.2
307,598 + ABZR87_RS17585 0.25 +1.0
307,599 - ABZR87_RS17585 0.25 +0.2
307,599 - ABZR87_RS17585 0.25 +0.0
307,723 - ABZR87_RS17585 0.31 -0.0

Or see this region's nucleotide sequence