Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15330

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15320 and ABZR87_RS15325 are separated by 55 nucleotidesABZR87_RS15325 and ABZR87_RS15330 are separated by 19 nucleotidesABZR87_RS15330 and ABZR87_RS15335 overlap by 4 nucleotidesABZR87_RS15335 and ABZR87_RS15340 are separated by 275 nucleotides ABZR87_RS15320: ABZR87_RS15320 - DUF969 domain-containing protein, at 3,224,690 to 3,225,427 _RS15320 ABZR87_RS15325: ABZR87_RS15325 - 5-oxoprolinase subunit PxpA, at 3,225,483 to 3,226,226 _RS15325 ABZR87_RS15330: ABZR87_RS15330 - biotin-dependent carboxyltransferase family protein, at 3,226,246 to 3,227,295 _RS15330 ABZR87_RS15335: ABZR87_RS15335 - 5-oxoprolinase subunit PxpB, at 3,227,292 to 3,227,939 _RS15335 ABZR87_RS15340: ABZR87_RS15340 - multidrug effflux MFS transporter, at 3,228,215 to 3,229,429 _RS15340 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3225.407 kb on + strandat 3225.407 kb on + strandat 3225.408 kb on - strandat 3225.408 kb on - strandat 3225.421 kb on + strandat 3225.421 kb on + strandat 3225.447 kb on + strandat 3225.448 kb on - strandat 3225.450 kb on + strandat 3225.450 kb on + strandat 3225.451 kb on - strandat 3225.451 kb on - strandat 3225.730 kb on + strand, within ABZR87_RS15325at 3225.730 kb on + strand, within ABZR87_RS15325at 3225.731 kb on - strand, within ABZR87_RS15325at 3225.731 kb on - strand, within ABZR87_RS15325at 3225.895 kb on + strand, within ABZR87_RS15325at 3225.895 kb on + strand, within ABZR87_RS15325at 3225.895 kb on + strand, within ABZR87_RS15325at 3225.896 kb on - strand, within ABZR87_RS15325at 3225.896 kb on - strand, within ABZR87_RS15325at 3226.338 kb on - strandat 3226.338 kb on - strandat 3226.338 kb on - strandat 3226.692 kb on - strand, within ABZR87_RS15330at 3226.799 kb on + strand, within ABZR87_RS15330at 3226.799 kb on + strand, within ABZR87_RS15330at 3226.800 kb on - strand, within ABZR87_RS15330at 3226.800 kb on - strand, within ABZR87_RS15330at 3226.800 kb on - strand, within ABZR87_RS15330at 3226.800 kb on - strand, within ABZR87_RS15330at 3226.940 kb on + strand, within ABZR87_RS15330at 3226.940 kb on + strand, within ABZR87_RS15330at 3226.941 kb on - strand, within ABZR87_RS15330at 3226.941 kb on - strand, within ABZR87_RS15330at 3227.162 kb on + strand, within ABZR87_RS15330at 3227.162 kb on + strand, within ABZR87_RS15330at 3227.162 kb on + strand, within ABZR87_RS15330at 3227.163 kb on - strand, within ABZR87_RS15330at 3227.163 kb on - strand, within ABZR87_RS15330at 3227.163 kb on - strand, within ABZR87_RS15330at 3227.163 kb on - strand, within ABZR87_RS15330at 3227.394 kb on + strand, within ABZR87_RS15335at 3227.394 kb on + strand, within ABZR87_RS15335at 3227.428 kb on + strand, within ABZR87_RS15335at 3227.428 kb on + strand, within ABZR87_RS15335at 3227.429 kb on - strand, within ABZR87_RS15335at 3227.533 kb on + strand, within ABZR87_RS15335at 3227.533 kb on + strand, within ABZR87_RS15335at 3227.533 kb on + strand, within ABZR87_RS15335at 3227.533 kb on + strand, within ABZR87_RS15335at 3227.534 kb on - strand, within ABZR87_RS15335at 3227.534 kb on - strand, within ABZR87_RS15335at 3227.534 kb on - strand, within ABZR87_RS15335at 3227.534 kb on - strand, within ABZR87_RS15335at 3227.564 kb on - strand, within ABZR87_RS15335at 3227.572 kb on + strand, within ABZR87_RS15335at 3227.572 kb on + strand, within ABZR87_RS15335at 3227.572 kb on + strand, within ABZR87_RS15335at 3227.573 kb on - strand, within ABZR87_RS15335at 3227.573 kb on - strand, within ABZR87_RS15335at 3227.573 kb on - strand, within ABZR87_RS15335at 3227.942 kb on + strandat 3227.943 kb on - strandat 3228.022 kb on + strandat 3228.022 kb on + strandat 3228.023 kb on - strandat 3228.042 kb on + strandat 3228.042 kb on + strandat 3228.044 kb on + strandat 3228.044 kb on + strandat 3228.045 kb on - strandat 3228.045 kb on - strandat 3228.052 kb on - strandat 3228.058 kb on + strandat 3228.058 kb on + strandat 3228.058 kb on + strandat 3228.059 kb on - strandat 3228.109 kb on + strandat 3228.109 kb on + strandat 3228.109 kb on + strandat 3228.109 kb on + strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.110 kb on - strandat 3228.143 kb on + strandat 3228.157 kb on - strandat 3228.178 kb on + strandat 3228.178 kb on + strandat 3228.192 kb on + strandat 3228.193 kb on - strandat 3228.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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3,225,407 + +4.0
3,225,407 + +4.3
3,225,408 - +3.5
3,225,408 - +3.6
3,225,421 + +3.6
3,225,421 + +2.2
3,225,447 + +3.5
3,225,448 - -0.7
3,225,450 + +3.6
3,225,450 + +2.9
3,225,451 - -0.7
3,225,451 - -0.5
3,225,730 + ABZR87_RS15325 0.33 +6.3
3,225,730 + ABZR87_RS15325 0.33 +5.0
3,225,731 - ABZR87_RS15325 0.33 +4.5
3,225,731 - ABZR87_RS15325 0.33 +3.8
3,225,895 + ABZR87_RS15325 0.55 +4.7
3,225,895 + ABZR87_RS15325 0.55 +5.5
3,225,895 + ABZR87_RS15325 0.55 +4.6
3,225,896 - ABZR87_RS15325 0.56 +4.8
3,225,896 - ABZR87_RS15325 0.56 +5.3
3,226,338 - +3.2
3,226,338 - +3.4
3,226,338 - +3.2
3,226,692 - ABZR87_RS15330 0.42 +3.1
3,226,799 + ABZR87_RS15330 0.53 +2.7
3,226,799 + ABZR87_RS15330 0.53 +3.0
3,226,800 - ABZR87_RS15330 0.53 +2.8
3,226,800 - ABZR87_RS15330 0.53 +3.4
3,226,800 - ABZR87_RS15330 0.53 +3.1
3,226,800 - ABZR87_RS15330 0.53 +4.5
3,226,940 + ABZR87_RS15330 0.66 +3.0
3,226,940 + ABZR87_RS15330 0.66 +2.9
3,226,941 - ABZR87_RS15330 0.66 +3.4
3,226,941 - ABZR87_RS15330 0.66 +3.2
3,227,162 + ABZR87_RS15330 0.87 +3.3
3,227,162 + ABZR87_RS15330 0.87 +3.5
3,227,162 + ABZR87_RS15330 0.87 +3.6
3,227,163 - ABZR87_RS15330 0.87 +2.5
3,227,163 - ABZR87_RS15330 0.87 +3.4
3,227,163 - ABZR87_RS15330 0.87 +2.6
3,227,163 - ABZR87_RS15330 0.87 +4.2
3,227,394 + ABZR87_RS15335 0.16 +3.0
3,227,394 + ABZR87_RS15335 0.16 +3.6
3,227,428 + ABZR87_RS15335 0.21 +3.1
3,227,428 + ABZR87_RS15335 0.21 +3.6
3,227,429 - ABZR87_RS15335 0.21 +3.6
3,227,533 + ABZR87_RS15335 0.37 +2.8
3,227,533 + ABZR87_RS15335 0.37 +3.9
3,227,533 + ABZR87_RS15335 0.37 +3.6
3,227,533 + ABZR87_RS15335 0.37 +0.4
3,227,534 - ABZR87_RS15335 0.37 +3.9
3,227,534 - ABZR87_RS15335 0.37 +3.8
3,227,534 - ABZR87_RS15335 0.37 +3.1
3,227,534 - ABZR87_RS15335 0.37 +3.0
3,227,564 - ABZR87_RS15335 0.42 +2.7
3,227,572 + ABZR87_RS15335 0.43 +4.0
3,227,572 + ABZR87_RS15335 0.43 +3.5
3,227,572 + ABZR87_RS15335 0.43 +4.4
3,227,573 - ABZR87_RS15335 0.43 +2.6
3,227,573 - ABZR87_RS15335 0.43 +3.4
3,227,573 - ABZR87_RS15335 0.43 +2.7
3,227,942 + +3.8
3,227,943 - +3.6
3,228,022 + +3.6
3,228,022 + +4.3
3,228,023 - +2.4
3,228,042 + +3.8
3,228,042 + +3.8
3,228,044 + +3.4
3,228,044 + +4.7
3,228,045 - +4.1
3,228,045 - +3.3
3,228,052 - +3.8
3,228,058 + +3.6
3,228,058 + +3.7
3,228,058 + +4.4
3,228,059 - +2.4
3,228,109 + +4.2
3,228,109 + +3.6
3,228,109 + +2.8
3,228,109 + +4.0
3,228,110 - +0.1
3,228,110 - +0.1
3,228,110 - +0.2
3,228,110 - +0.1
3,228,110 - +1.6
3,228,110 - -0.2
3,228,110 - +0.3
3,228,143 + -0.1
3,228,157 - -0.2
3,228,178 + +3.8
3,228,178 + +2.8
3,228,192 + +2.5
3,228,193 - +0.5
3,228,193 - +0.4

Or see this region's nucleotide sequence