Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14145

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14140 and ABZR87_RS14145 are separated by 16 nucleotidesABZR87_RS14145 and ABZR87_RS14150 are separated by 21 nucleotides ABZR87_RS14140: ABZR87_RS14140 - carbamoyl-phosphate synthase large subunit, at 2,984,202 to 2,987,447 _RS14140 ABZR87_RS14145: ABZR87_RS14145 - leucine efflux protein LeuE, at 2,987,464 to 2,988,138 _RS14145 ABZR87_RS14150: ABZR87_RS14150 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 2,988,160 to 2,989,296 _RS14150 Position (kb) 2987 2988 2989Strain fitness (log2 ratio) -1 0 1at 2987.532 kb on + strand, within ABZR87_RS14145at 2987.533 kb on - strand, within ABZR87_RS14145at 2987.607 kb on - strand, within ABZR87_RS14145at 2987.607 kb on - strand, within ABZR87_RS14145at 2987.617 kb on - strand, within ABZR87_RS14145at 2987.871 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.898 kb on - strand, within ABZR87_RS14145at 2987.898 kb on - strand, within ABZR87_RS14145at 2988.038 kb on + strand, within ABZR87_RS14145at 2988.039 kb on - strand, within ABZR87_RS14145at 2988.039 kb on - strand, within ABZR87_RS14145at 2988.161 kb on + strandat 2988.161 kb on + strandat 2988.162 kb on - strandat 2988.162 kb on - strandat 2988.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,987,532 + ABZR87_RS14145 0.10 -0.2
2,987,533 - ABZR87_RS14145 0.10 +0.2
2,987,607 - ABZR87_RS14145 0.21 +0.5
2,987,607 - ABZR87_RS14145 0.21 -0.6
2,987,617 - ABZR87_RS14145 0.23 +0.1
2,987,871 - ABZR87_RS14145 0.60 +0.0
2,987,886 - ABZR87_RS14145 0.63 +0.6
2,987,886 - ABZR87_RS14145 0.63 +0.0
2,987,886 - ABZR87_RS14145 0.63 +0.5
2,987,898 - ABZR87_RS14145 0.64 -1.0
2,987,898 - ABZR87_RS14145 0.64 +1.0
2,988,038 + ABZR87_RS14145 0.85 +0.8
2,988,039 - ABZR87_RS14145 0.85 -1.5
2,988,039 - ABZR87_RS14145 0.85 -0.2
2,988,161 + -0.8
2,988,161 + +0.8
2,988,162 - +0.1
2,988,162 - +0.3
2,988,162 - -0.4

Or see this region's nucleotide sequence