Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13455

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13450 and ABZR87_RS13455 are separated by 114 nucleotidesABZR87_RS13455 and ABZR87_RS13460 are separated by 58 nucleotidesABZR87_RS13460 and ABZR87_RS13465 are separated by 105 nucleotides ABZR87_RS13450: ABZR87_RS13450 - hypothetical protein, at 2,847,595 to 2,848,155 _RS13450 ABZR87_RS13455: ABZR87_RS13455 - dihydrolipoyl dehydrogenase, at 2,848,270 to 2,850,051 _RS13455 ABZR87_RS13460: ABZR87_RS13460 - MFS transporter, at 2,850,110 to 2,850,682 _RS13460 ABZR87_RS13465: ABZR87_RS13465 - dihydrolipoyllysine-residue acetyltransferase, at 2,850,788 to 2,852,461 _RS13465 Position (kb) 2848 2849 2850 2851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2847.270 kb on + strandat 2847.270 kb on + strandat 2847.411 kb on + strandat 2847.412 kb on - strandat 2847.412 kb on - strandat 2847.466 kb on + strandat 2847.466 kb on + strandat 2847.473 kb on - strandat 2847.564 kb on + strandat 2847.565 kb on - strandat 2847.587 kb on + strandat 2847.666 kb on + strand, within ABZR87_RS13450at 2847.823 kb on + strand, within ABZR87_RS13450at 2847.823 kb on + strand, within ABZR87_RS13450at 2847.823 kb on + strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.824 kb on - strand, within ABZR87_RS13450at 2847.889 kb on - strand, within ABZR87_RS13450at 2847.910 kb on + strand, within ABZR87_RS13450at 2847.910 kb on + strand, within ABZR87_RS13450at 2847.911 kb on - strand, within ABZR87_RS13450at 2847.911 kb on - strand, within ABZR87_RS13450at 2847.911 kb on - strand, within ABZR87_RS13450at 2847.920 kb on + strand, within ABZR87_RS13450at 2847.920 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.936 kb on + strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.937 kb on - strand, within ABZR87_RS13450at 2847.949 kb on + strand, within ABZR87_RS13450at 2847.949 kb on + strand, within ABZR87_RS13450at 2847.949 kb on + strand, within ABZR87_RS13450at 2847.949 kb on + strand, within ABZR87_RS13450at 2848.037 kb on + strand, within ABZR87_RS13450at 2848.246 kb on + strandat 2848.246 kb on + strandat 2848.247 kb on - strandat 2848.278 kb on + strandat 2850.228 kb on + strand, within ABZR87_RS13460at 2850.229 kb on - strand, within ABZR87_RS13460at 2850.316 kb on - strand, within ABZR87_RS13460at 2850.325 kb on - strand, within ABZR87_RS13460at 2850.325 kb on - strand, within ABZR87_RS13460at 2850.372 kb on + strand, within ABZR87_RS13460at 2850.608 kb on - strand, within ABZR87_RS13460at 2850.608 kb on - strand, within ABZR87_RS13460at 2850.608 kb on - strand, within ABZR87_RS13460

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,847,270 + -0.6
2,847,270 + -1.2
2,847,411 + -2.2
2,847,412 - +0.7
2,847,412 - +0.5
2,847,466 + -1.1
2,847,466 + +0.2
2,847,473 - -0.0
2,847,564 + +1.4
2,847,565 - +0.0
2,847,587 + -1.0
2,847,666 + ABZR87_RS13450 0.13 -0.5
2,847,823 + ABZR87_RS13450 0.41 -0.7
2,847,823 + ABZR87_RS13450 0.41 -0.5
2,847,823 + ABZR87_RS13450 0.41 -0.3
2,847,824 - ABZR87_RS13450 0.41 +2.3
2,847,824 - ABZR87_RS13450 0.41 -0.9
2,847,824 - ABZR87_RS13450 0.41 -0.2
2,847,824 - ABZR87_RS13450 0.41 +0.2
2,847,824 - ABZR87_RS13450 0.41 +0.3
2,847,824 - ABZR87_RS13450 0.41 +0.9
2,847,824 - ABZR87_RS13450 0.41 -1.0
2,847,824 - ABZR87_RS13450 0.41 +0.9
2,847,889 - ABZR87_RS13450 0.52 -0.1
2,847,910 + ABZR87_RS13450 0.56 +1.3
2,847,910 + ABZR87_RS13450 0.56 -1.2
2,847,911 - ABZR87_RS13450 0.56 +0.8
2,847,911 - ABZR87_RS13450 0.56 +0.2
2,847,911 - ABZR87_RS13450 0.56 +0.2
2,847,920 + ABZR87_RS13450 0.58 -0.4
2,847,920 + ABZR87_RS13450 0.58 -1.6
2,847,936 + ABZR87_RS13450 0.61 -0.4
2,847,936 + ABZR87_RS13450 0.61 -0.9
2,847,936 + ABZR87_RS13450 0.61 +1.5
2,847,936 + ABZR87_RS13450 0.61 -0.3
2,847,936 + ABZR87_RS13450 0.61 -0.9
2,847,936 + ABZR87_RS13450 0.61 -0.3
2,847,937 - ABZR87_RS13450 0.61 -0.8
2,847,937 - ABZR87_RS13450 0.61 -0.8
2,847,937 - ABZR87_RS13450 0.61 +1.0
2,847,937 - ABZR87_RS13450 0.61 -0.4
2,847,937 - ABZR87_RS13450 0.61 +0.6
2,847,937 - ABZR87_RS13450 0.61 +1.4
2,847,937 - ABZR87_RS13450 0.61 +0.0
2,847,937 - ABZR87_RS13450 0.61 +0.3
2,847,937 - ABZR87_RS13450 0.61 -0.7
2,847,949 + ABZR87_RS13450 0.63 +0.8
2,847,949 + ABZR87_RS13450 0.63 -0.1
2,847,949 + ABZR87_RS13450 0.63 +0.0
2,847,949 + ABZR87_RS13450 0.63 -0.0
2,848,037 + ABZR87_RS13450 0.79 -0.2
2,848,246 + +0.5
2,848,246 + -0.6
2,848,247 - +0.8
2,848,278 + -0.8
2,850,228 + ABZR87_RS13460 0.21 -2.3
2,850,229 - ABZR87_RS13460 0.21 -0.7
2,850,316 - ABZR87_RS13460 0.36 -0.2
2,850,325 - ABZR87_RS13460 0.38 -1.6
2,850,325 - ABZR87_RS13460 0.38 -1.3
2,850,372 + ABZR87_RS13460 0.46 -1.9
2,850,608 - ABZR87_RS13460 0.87 -1.4
2,850,608 - ABZR87_RS13460 0.87 -2.8
2,850,608 - ABZR87_RS13460 0.87 -0.6

Or see this region's nucleotide sequence