Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13335

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13325 and ABZR87_RS13330 are separated by 84 nucleotidesABZR87_RS13330 and ABZR87_RS13335 are separated by 35 nucleotidesABZR87_RS13335 and ABZR87_RS13340 are separated by 110 nucleotides ABZR87_RS13325: ABZR87_RS13325 - ATP-dependent DNA helicase, at 2,824,721 to 2,826,862 _RS13325 ABZR87_RS13330: ABZR87_RS13330 - DUF465 domain-containing protein, at 2,826,947 to 2,827,150 _RS13330 ABZR87_RS13335: ABZR87_RS13335 - hypothetical protein, at 2,827,186 to 2,827,950 _RS13335 ABZR87_RS13340: ABZR87_RS13340 - Tex family protein, at 2,828,061 to 2,830,394 _RS13340 Position (kb) 2827 2828Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2826.228 kb on + strand, within ABZR87_RS13325at 2826.228 kb on + strand, within ABZR87_RS13325at 2826.232 kb on - strand, within ABZR87_RS13325at 2826.232 kb on - strand, within ABZR87_RS13325at 2826.257 kb on - strand, within ABZR87_RS13325at 2826.257 kb on - strand, within ABZR87_RS13325at 2826.257 kb on - strand, within ABZR87_RS13325at 2826.271 kb on + strand, within ABZR87_RS13325at 2826.272 kb on - strand, within ABZR87_RS13325at 2826.426 kb on + strand, within ABZR87_RS13325at 2826.427 kb on - strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.438 kb on + strand, within ABZR87_RS13325at 2826.439 kb on - strand, within ABZR87_RS13325at 2826.439 kb on - strand, within ABZR87_RS13325at 2826.591 kb on + strand, within ABZR87_RS13325at 2826.591 kb on + strand, within ABZR87_RS13325at 2826.591 kb on + strand, within ABZR87_RS13325at 2826.592 kb on - strand, within ABZR87_RS13325at 2826.592 kb on - strand, within ABZR87_RS13325at 2826.592 kb on - strand, within ABZR87_RS13325at 2826.597 kb on + strand, within ABZR87_RS13325at 2826.598 kb on - strand, within ABZR87_RS13325at 2826.598 kb on - strand, within ABZR87_RS13325at 2826.617 kb on - strand, within ABZR87_RS13325at 2826.712 kb on + strandat 2826.713 kb on - strandat 2826.713 kb on - strandat 2826.713 kb on - strandat 2826.713 kb on - strandat 2826.949 kb on - strandat 2826.980 kb on + strand, within ABZR87_RS13330at 2826.980 kb on + strand, within ABZR87_RS13330at 2826.981 kb on - strand, within ABZR87_RS13330at 2826.981 kb on - strand, within ABZR87_RS13330at 2826.981 kb on - strand, within ABZR87_RS13330at 2827.132 kb on + strandat 2827.132 kb on + strandat 2827.133 kb on - strandat 2827.133 kb on - strandat 2827.133 kb on - strandat 2827.133 kb on - strandat 2827.187 kb on + strandat 2827.187 kb on + strandat 2827.187 kb on + strandat 2827.187 kb on + strandat 2827.188 kb on - strandat 2827.188 kb on - strandat 2827.376 kb on + strand, within ABZR87_RS13335at 2827.377 kb on - strand, within ABZR87_RS13335at 2827.535 kb on + strand, within ABZR87_RS13335at 2827.535 kb on + strand, within ABZR87_RS13335at 2827.535 kb on + strand, within ABZR87_RS13335at 2827.536 kb on - strand, within ABZR87_RS13335at 2827.536 kb on - strand, within ABZR87_RS13335at 2827.942 kb on - strandat 2827.942 kb on - strandat 2827.953 kb on + strandat 2827.954 kb on - strandat 2827.954 kb on - strandat 2827.996 kb on - strandat 2827.996 kb on - strandat 2828.253 kb on + strandat 2828.253 kb on + strandat 2828.254 kb on - strandat 2828.254 kb on - strandat 2828.379 kb on + strand, within ABZR87_RS13340at 2828.379 kb on + strand, within ABZR87_RS13340at 2828.380 kb on - strand, within ABZR87_RS13340at 2828.380 kb on - strand, within ABZR87_RS13340at 2828.380 kb on - strand, within ABZR87_RS13340at 2828.380 kb on - strand, within ABZR87_RS13340at 2828.389 kb on - strand, within ABZR87_RS13340at 2828.389 kb on - strand, within ABZR87_RS13340at 2828.706 kb on + strand, within ABZR87_RS13340at 2828.709 kb on + strand, within ABZR87_RS13340at 2828.709 kb on + strand, within ABZR87_RS13340at 2828.709 kb on + strand, within ABZR87_RS13340at 2828.710 kb on - strand, within ABZR87_RS13340at 2828.710 kb on - strand, within ABZR87_RS13340at 2828.715 kb on + strand, within ABZR87_RS13340at 2828.716 kb on - strand, within ABZR87_RS13340at 2828.716 kb on - strand, within ABZR87_RS13340at 2828.717 kb on + strand, within ABZR87_RS13340at 2828.717 kb on + strand, within ABZR87_RS13340at 2828.718 kb on - strand, within ABZR87_RS13340at 2828.718 kb on - strand, within ABZR87_RS13340

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,826,228 + ABZR87_RS13325 0.70 -0.3
2,826,228 + ABZR87_RS13325 0.70 -1.3
2,826,232 - ABZR87_RS13325 0.71 -0.5
2,826,232 - ABZR87_RS13325 0.71 -0.0
2,826,257 - ABZR87_RS13325 0.72 +0.3
2,826,257 - ABZR87_RS13325 0.72 -1.2
2,826,257 - ABZR87_RS13325 0.72 +0.1
2,826,271 + ABZR87_RS13325 0.72 +1.0
2,826,272 - ABZR87_RS13325 0.72 -0.0
2,826,426 + ABZR87_RS13325 0.80 -0.4
2,826,427 - ABZR87_RS13325 0.80 +0.0
2,826,438 + ABZR87_RS13325 0.80 -1.7
2,826,438 + ABZR87_RS13325 0.80 -0.9
2,826,438 + ABZR87_RS13325 0.80 +0.1
2,826,438 + ABZR87_RS13325 0.80 +0.2
2,826,438 + ABZR87_RS13325 0.80 -0.3
2,826,438 + ABZR87_RS13325 0.80 -0.4
2,826,438 + ABZR87_RS13325 0.80 -0.1
2,826,438 + ABZR87_RS13325 0.80 -1.3
2,826,439 - ABZR87_RS13325 0.80 +1.1
2,826,439 - ABZR87_RS13325 0.80 -0.5
2,826,591 + ABZR87_RS13325 0.87 -0.0
2,826,591 + ABZR87_RS13325 0.87 -0.4
2,826,591 + ABZR87_RS13325 0.87 +0.2
2,826,592 - ABZR87_RS13325 0.87 -1.7
2,826,592 - ABZR87_RS13325 0.87 -0.1
2,826,592 - ABZR87_RS13325 0.87 +1.4
2,826,597 + ABZR87_RS13325 0.88 -2.3
2,826,598 - ABZR87_RS13325 0.88 +0.3
2,826,598 - ABZR87_RS13325 0.88 +1.0
2,826,617 - ABZR87_RS13325 0.89 +0.4
2,826,712 + -0.8
2,826,713 - +0.0
2,826,713 - -0.8
2,826,713 - -0.2
2,826,713 - +0.8
2,826,949 - +0.4
2,826,980 + ABZR87_RS13330 0.16 -0.8
2,826,980 + ABZR87_RS13330 0.16 +0.3
2,826,981 - ABZR87_RS13330 0.17 +0.3
2,826,981 - ABZR87_RS13330 0.17 +0.2
2,826,981 - ABZR87_RS13330 0.17 -1.3
2,827,132 + -1.4
2,827,132 + -0.8
2,827,133 - +0.5
2,827,133 - -0.1
2,827,133 - +0.0
2,827,133 - -0.5
2,827,187 + -2.1
2,827,187 + -0.3
2,827,187 + +0.0
2,827,187 + -0.6
2,827,188 - -0.9
2,827,188 - -0.2
2,827,376 + ABZR87_RS13335 0.25 -1.8
2,827,377 - ABZR87_RS13335 0.25 -1.9
2,827,535 + ABZR87_RS13335 0.46 -0.6
2,827,535 + ABZR87_RS13335 0.46 -0.1
2,827,535 + ABZR87_RS13335 0.46 -1.7
2,827,536 - ABZR87_RS13335 0.46 -3.0
2,827,536 - ABZR87_RS13335 0.46 -0.1
2,827,942 - +0.2
2,827,942 - +0.0
2,827,953 + -0.3
2,827,954 - -0.1
2,827,954 - -0.3
2,827,996 - -0.7
2,827,996 - +0.9
2,828,253 + -0.7
2,828,253 + +3.0
2,828,254 - +0.2
2,828,254 - +0.1
2,828,379 + ABZR87_RS13340 0.14 -1.8
2,828,379 + ABZR87_RS13340 0.14 +0.7
2,828,380 - ABZR87_RS13340 0.14 -1.0
2,828,380 - ABZR87_RS13340 0.14 +1.3
2,828,380 - ABZR87_RS13340 0.14 +1.5
2,828,380 - ABZR87_RS13340 0.14 +0.7
2,828,389 - ABZR87_RS13340 0.14 -0.0
2,828,389 - ABZR87_RS13340 0.14 -0.3
2,828,706 + ABZR87_RS13340 0.28 -0.3
2,828,709 + ABZR87_RS13340 0.28 -0.5
2,828,709 + ABZR87_RS13340 0.28 -2.3
2,828,709 + ABZR87_RS13340 0.28 -2.3
2,828,710 - ABZR87_RS13340 0.28 -0.5
2,828,710 - ABZR87_RS13340 0.28 -0.1
2,828,715 + ABZR87_RS13340 0.28 +1.1
2,828,716 - ABZR87_RS13340 0.28 -0.9
2,828,716 - ABZR87_RS13340 0.28 -1.0
2,828,717 + ABZR87_RS13340 0.28 +0.4
2,828,717 + ABZR87_RS13340 0.28 -0.4
2,828,718 - ABZR87_RS13340 0.28 +0.0
2,828,718 - ABZR87_RS13340 0.28 +0.1

Or see this region's nucleotide sequence